CF833127

Overview
NameCF833127
Unique NameCF833127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9646 contig Csv1_Contig9646:316..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833127 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 7.821e-94
Identity = 171/208 (82.21%), Postives = 186/208 (89.42%), Query Frame = -2
Query:  188 LPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVPRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKALNAA 811
            LP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEP + RRPFRALLDVGL++TTTGNRVFGALKG+LDGGLDIPHS+KRFAG++K+ +QLD EV RKYI+GGHVAAYMRTLMEDEPEKYQSHF EYIK+GIEAD LE LYKKVHAAIRA+P             KRYNLKKLTY+ERKARLVERL ALN+A
Sbjct:   83 LPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALNSA 290          
BLAST of CF833127 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 330.102 bits (845), Expect = 8.949e-90
Identity = 161/208 (77.40%), Postives = 183/208 (87.98%), Query Frame = -2
Query:  188 LPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVPRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKALNAA 811
            LP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD EYEGNVEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVFGALKG+LDGGLDIPHS+KRFAGF K++KQLDAE+ R YIYGGHV+ YM+ L EDEPEK Q+HF  YIK+G+EA+++EELYKKVHAAIRADPN            KRYNLKKLTYEERK +L+ER+KALN A
Sbjct:   83 LPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGA 290          
BLAST of CF833127 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 328.176 bits (840), Expect = 3.400e-89
Identity = 159/208 (76.44%), Postives = 183/208 (87.98%), Query Frame = -2
Query:  188 LPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVPRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKALNAA 811
            LP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD EYEGNVEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVFGALKG+LDGGLDIPHS+KRFAGF K++KQLDAE+ R YIYGGHV+ YM+ L EDEPEK Q+HF  YIK+G+EA+++EE+YKKVHAAIRA+PN            KRYNLKKLTYEERK +L+ER+KALN A
Sbjct:   83 LPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALNGA 290          
BLAST of CF833127 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.910e-88
Identity = 156/208 (75.00%), Postives = 179/208 (86.06%), Query Frame = -2
Query:  188 LPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVPRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKALNAA 811
            LPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEP + RRPFRALLDVGL++TTTGNRVFGALKG+LDGGLDIPHS+KRFAGF KD KQLD+++ RKYIYGGHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP             KRYNLKKLTYE+RKA LVERL ALN++
Sbjct:   84 LPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSS 291          
BLAST of CF833127 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 4.910e-88
Identity = 156/208 (75.00%), Postives = 179/208 (86.06%), Query Frame = -2
Query:  188 LPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVPRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKALNAA 811
            LPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEP + RRPFRALLDVGL++TTTGNRVFGALKG+LDGGLDIPHS+KRFAGF KD KQLD+++ RKYIYGGHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP             KRYNLKKLTYE+RKA LVERL ALN++
Sbjct:   84 LPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSS 291          
BLAST of CF833127 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.429e-87
Identity = 156/208 (75.00%), Postives = 178/208 (85.58%), Query Frame = -2
Query:  188 LPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVPRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKALNAA 811
            LPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EYEGNVEATGEDY VEP + RRPFRALLDVGL++TTTGNRVFGALKG+LDGGLDIPHS+KRFAGF KD KQLD+++ RKYIYGGHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP             KRYNLKKLTYE+RKA LVERL ALN++
Sbjct:   84 LPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSS 291          
BLAST of CF833127 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.820e-58
Identity = 112/205 (54.63%), Postives = 150/205 (73.17%), Query Frame = -2
Query:  200 LPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVPRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKA 811
            LP+YG++VGLTNYAAAYCTGLLLARR+LK L++D  Y G  E  G++Y+VE  ++    FR  LD GL++TTTG R+FGA+KG++DGGL+IPHS KRF G+  +SK  +A+V R++I+  H+A YM+TL E+EPE +Q  F +YIK GI AD +EE+YKK H AIRADP++           KR+N  KLT  ERK R V+++KA
Sbjct:   83 LPKYGIKVGLTNYAAAYCTGLLLARRLLKQLKLDTLYTGTTEVDGDEYNVEEHDDGPGAFRCYLDTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEENEPENFQRQFSQYIKNGITADGIEEMYKKAHEAIRADPDRAEIVKTKEPVKKRWNRAKLTLSERKDR-VKQIKA 286          
BLAST of CF833127 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.703e-56
Identity = 105/205 (51.22%), Postives = 149/205 (72.68%), Query Frame = -2
Query:  200 LPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPT-ENRRPFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVPRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVERLKA 811
            LPRYG++VGLTNYAAAYCTGLLLARR+L  L +  +Y G  +  GED++VE   +  RPFRA LDVGL +TTTGNRVF A+KG++DGG+DIPHS  RF G+ ++S QL+A+  R+YI+GGHV+ YM+ L E++ EKY++HF  +IK GI AD++E++Y+  HA IRA+P             KR+N  K++ ++++ R+ ++  A
Sbjct:   83 LPRYGVKVGLTNYAAAYCTGLLLARRLLTNLGLADKYAGQTDIDGEDFNVEHMGDGPRPFRAFLDVGLTRTTTGNRVFAAMKGAVDGGIDIPHSPSRFVGYDEESSQLEADKLRQYIFGGHVSDYMKYLQEEDEEKYKAHFSRFIKEGITADSMEQMYRDAHAKIRANPAHEKKQPRDGLVKKRWNRAKMSLKQKRDRVKQKKAA 287          
BLAST of CF833127 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 2.225e-56
Identity = 110/200 (55.00%), Postives = 147/200 (73.50%), Query Frame = -2
Query:  218 LPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVPRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADP-NQXXXXXXXXXXXKRYNLKKLTYEERKARL 811
            LP+YG++VGLTNYAAAYCTGLL+ARRVL  L +D+ Y G  E TGE+++VEP ++    FR  LDVGL +TTTG RVFGA+KG++DGGL+IPHS KRF G+S ++K  +A+V R +I+G HVA YMR+L E++ E ++  F  YIK GI AD+LE++YKK H AIR DP ++           KR+N KKLT E+RK ++
Sbjct:   83 LPKYGIQVGLTNYAAAYCTGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVEPVDDGPGAFRCFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFGQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRNDPTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKI 282          
BLAST of CF833127 vs. ExPASy Swiss-Prot
Match: RL5_AEDAE (60S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.442e-55
Identity = 109/201 (54.23%), Postives = 144/201 (71.64%), Query Frame = -2
Query:  212 LPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPTENRR-PFRALLDVGLVKTTTGNRVFGALKGSLDGGLDIPHSEKRFAGFSKDSKQLDAEVPRKYIYGGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQXXXXXXXXXXXKRYNLKKLTYEERKARLVE 811
            LPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP ++    FR  LDVGL +TTTG R+FGA+KG++DGGL+IPHS KRF G+S ++K  +AEV R +I+G HVA YMRTL E++ + Y+  F +YI  GI+AD++E +YK  HA IR DP             KR+NL KLT E RKA++ +
Sbjct:   83 LPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYTGCTDVTGEEYLVEPVDDGPGAFRCYLDVGLARTTTGARIFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEVHRAHIFGQHVADYMRTLEEEDEDAYKRQFSKYIALGIKADDIETIYKNAHAGIRKDP-AFHKKPEKKVTKKRFNLAKLTLEARKAKIAK 282          
The following BLAST results are available for this feature:
BLAST of CF833127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RL5_CUCSA7.821e-9482.2160S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL51_ARATH8.949e-9077.4060S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL52_ARATH3.400e-8976.4460S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ORYSJ4.910e-8875.0060S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI4.910e-8875.0060S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ1.429e-8775.0060S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL5_LYSTE1.820e-5854.6360S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_SUBDO1.703e-5651.2260S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5_DROME2.225e-5655.0060S ribosomal protein L5 OS=Drosophila melanogaste... [more]
RL5_AEDAE1.442e-5554.2360S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03B03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833127 ID=CF833127; Name=CF833127; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTTTTTTTTTTTTCAGCAAACAACCAGGTCTCATCCCCTTTTGAAA
GCTCATAGAAACAACACTGTTCTCAACCTATCAAACAAGCCAGGTTCTTT
AATTTTAGTAATCTCTGAAAATAACCTATTGAACTAAGAAACAAAAACTT
CCTAGTATCGCATTCACTCATCGTCTTCATCATCTTCAGCAGCATTGAGG
GCTTTCAACCTTTCAACTAACCTGGCTTTCCTTTCCTCATACGTAAGTTT
CTTCAGGTTGTACCTCTTGGGCTCTGCTGGAGGCTTCTTCTCAAATTTCT
TCTGGTTAGGGTCTGCACGGATGGCAGCATGTACCTTCTTGTACAACTCT
TCAAGGTTATCAGCCTCAATACCTCTCTTGATGTATTCACAAAAGTGAGA
CTGGTACTTCTCTGGCTCATCTTCCATCAAAGTCCTCATGTAGGCAGCAA
CATGACCACCATAGATGTATTTACGGGGAACTTCAGCATCAAGTTGCTTA
CTATCCTTACTGAATCCAGCAAATCTCTTCTCACTGTGAGGGATATCAAG
TCCACCATCCAATGAACCCTTAAGAGCGCCAAAGACACGGTTACCAGTAG
TTGTTTTCACAAGACCAACATCGAGCAGGGCACGGAAAGGCCTCCTGTTC
TCAGTTGGCTCAACTGAATAGTCCTCTCCTGTTGCCTCAACGTTCCCCTC
ATACTCAGCATCCATCTCAAGCATTTTCAGGACTCGGCGGGCCAAGAGGA
GTCCAGTGCAATAAGCTGCTGCATAATTAGTGAGGCCCACCTCAAGACCA
TAACGGGGAAGC
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