CF833132

Overview
NameCF833132
Unique NameCF833132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6651 contig Csv1_Contig6651:526..1145. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833132 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.133e-37
Identity = 81/145 (55.86%), Postives = 99/145 (68.28%), Query Frame = -1
Query:  189 DETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEANLKHAGFDTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAG-NRTFKLPDPMYYI 620
            D T LSN+PYY K+G+GV+ +N TL++EWVN G A               LG KIVFL+GR  D+  VTEANLK AGF TWE+LILK        A+ YKS+ R+ L  +GYRI+G IGDQWSDLLG + G +RTFKLP+PMYYI
Sbjct:  109 DNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIGDQWSDLLGDHRGESRTFKLPNPMYYI 253          
BLAST of CF833132 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.207e-37
Identity = 80/146 (54.79%), Postives = 101/146 (69.18%), Query Frame = -1
Query:  189 DETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEANLKHAGFDTWEKLILKG-SSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAG-NRTFKLPDPMYYI 620
            D T LSN+PYY K+G+GV+ +N TL++EWVN G A               LG KI+FL+GR  D++ VTEANLK AG+ TWEKLILK     S   AV YK++ R+KL  +GY I+G IGDQWSDLLG + G +RTFKLP+P+YYI
Sbjct:  108 DGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNPLYYI 253          
BLAST of CF833132 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.920e-34
Identity = 77/142 (54.23%), Postives = 97/142 (68.31%), Query Frame = -1
Query:  201 DETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEANLKHAGFDTWEKLILKG-SSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAG-NRTFKLPDP 620
            D T LSN+PYY K+G+GV+ +N TL++EWVN G A               LG KI+FL+GR  D++ VTEANLK AG+ TWEKLILK     S   AV YK++ R+KL  +GY I+G IGDQWSDLLG + G +RTFKLP+P
Sbjct:  105 DGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNP 246          
BLAST of CF833132 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34
Identity = 70/144 (48.61%), Postives = 92/144 (63.89%), Query Frame = -1
Query:  189 DETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXLGIKIVFLTGRPEDQRNVTEANLKHAGFDTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAGNRTFKLPDPMYYI 620
            DET LSNLPYY+ + +G++ ++   F++WV  G A               LG K+  LTGR E  R+VT  NL +AGF  W KLIL+GS   G+TA  YKS  R  +  +G+RI+GN GDQWSDLLG++   R+FKLP+PMYYI
Sbjct:  111 DETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNAMVEEGFRIVGNSGDQWSDLLGSSMSYRSFKLPNPMYYI 254          
BLAST of CF833132 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.396e-23
Identity = 62/145 (42.76%), Postives = 85/145 (58.62%), Query Frame = -1
Query:  189 DETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXL-GIKIVFLTGRPEDQRNVTEANLKHAGFDTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAGNRTFKLPDPMYYI 620
            D+T LS++PYYAK G+G +  +P  +  W+ TG +                 GI+ + L+ R +  +NVT  NL+ AG   W+ LILK +  S    VVYKS  RK L  KGY I+GNIGDQW+DL+    G R FKLP+P+YY+
Sbjct:  121 DDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIELGIEPIILSDRWKLWKNVTLDNLEAAGVTYWKHLILKPNG-SNLRQVVYKSKVRKSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 263          
BLAST of CF833132 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.755e-22
Identity = 59/145 (40.69%), Postives = 82/145 (56.55%), Query Frame = -1
Query:  189 DETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXL-GIKIVFLTGRPEDQRNVTEANLKHAGFDTWEKLILKGSSHSGETAVVYKSSERKKLEMKGYRIIGNIGDQWSDLLGTNAGNRTFKLPDPMYYI 620
            D+T LS++PYYAK G+G +   P  +  W+ +G++                 GI+ + ++ R +    VT  NLK  G   W+ LILK +  S  T VVYKS  R  L  KGY I+GNIGDQW+DL+    G R FKLP+P+YY+
Sbjct:  126 DDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLELGIEPIIISDRWKKLSEVTVENLKAVGVTKWKHLILKPNG-SKLTQVVYKSKVRNSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 268          
The following BLAST results are available for this feature:
BLAST of CF833132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VSPB_SOYBN4.133e-3755.86Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
VSPA_SOYBN9.207e-3754.79Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
S25K_SOYBN1.920e-3454.23Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
PPA1_SOLLC5.586e-3448.61Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSP2_ARATH3.396e-2342.76Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH3.755e-2240.69Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_03B06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833132 ID=CF833132; Name=CF833132; organism=Citrus sinensis; type=EST; length=620bp
TTTTTTTTTTTCCCTTTAAAAAAATACTAGTTATGCACTTGCATTTATTG
AAACCCCTAATTATATTAATTAGCTAATGCAGTACAATGGATCAGACAGC
TTGAAAGTTAAAGCAAATTTGGTGCACAAATGAAGGCCCTTCGATTATTT
ATTCAAAATCCCAAGTAAACATTATTTATTAATTAGCCAATGTAATACAT
TGGGTCAGGCAGCTTGAACGTCCGATTGCCGGCGTTGGTGCCCAGGAGAT
CGCTCCATTGATCACCTATGTTTCCAATAATTCTGTACCCTTTCATCTCA
AGCTTCTTTCTTTCACTTGATTTGTACACCACTGCTGTTTCTCCTGAGTG
AGATGATCCCTTGAGGATGAGCTTCTCCCAGGTGTCGAATCCAGCATGCT
TTAAATTAGCTTCTGTAACATTTCTCTGATCTTCTGGTCTTCCCGTGAGG
AATACAATCTTAATTCCAAGCAATAATAATTTTTTGTAAAGCTTAAGGCT
CTCTGGCAGCGGTGGTGCTTTTCCGGTGTTCACCCATTCATTAAACAAAG
TAGGGTTGTATGGCTTCACCCCGAATCCATTCTTAGCATAATATGGCAAA
TTAGATAGCGAGGTTTCATC
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