CF833133

Overview
NameCF833133
Unique NameCF833133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11314 contig Csv1_Contig11314:697..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF833133 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 3.689e-31
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = -1 
Query:  147 DGLSNLLKCCLPATIRCLFHPSAHVRALSTSVLRDFLHTSSFKSNIEQ----VERNGIHGSSLHYFNIDAINWQADIEKCLTWEGHSRLATGMPIQFFDIAAKELGC 455
            DGLSNLLKC LPATIRCL HPSAHVRALSTSVLRD ++ SS    +       E+NG++  S  +FN  +I+W+ADI+ CL WE HS L+T MP QF D AA+ELGC
Sbjct: 1061 DGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFFNAASIDWKADIQNCLNWEAHSLLSTTMPTQFLDTAARELGC 1167
[Close]
BLAST of CF833133 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.923e-28
Identity = 62/106 (58.49%), Postives = 72/106 (67.92%), Query Frame = -1 
Query:  147 ADGLSNLLKCCLPATIRCLFHPSAHVRALSTSVLRDFLHTSSFKSN--IEQVERNGIHGSSLHYFNIDAINWQADIEKCLTWEGHSRLATGMPIQFFDIAAKELGC 458
            ADGLSNLLKC L  TIRCL HPSAHVRALS SVLRD L++    S+  I+   RNGI   +        INWQAD+E+C+ WE HSR ATG+ + F   AAKELGC
Sbjct: 1051 ADGLSNLLKCRLSTTIRCLSHPSAHVRALSMSVLRDILNSGQINSSKLIQGEHRNGIQSPTYQCLAASIINWQADVERCIEWEAHSRRATGLTLAFLTAAAKELGC 1156
The following BLAST results are available for this feature:
BLAST of CF833133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH3.689e-3160.75Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ2.923e-2858.49Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_03B07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833133 ID=CF833133; Name=CF833133; organism=Citrus sinensis; type=EST; length=458bp
TTTTTTTTTTTTTTTTTAAAACAAATGATATCTTTCAAACCCATTGATCT
GGTTATTACCATCCATAAATCTCACTTGGAAAAATAAATTATAATCACAA
ACCTCAAATGACTGCTGGAGGTTATTTTATTTCATATAGATATTGTACAA
CCTAATTCCTTGGCAGCGATATCAAAAAACTGAATCGGCATTCCTGTTGC
AAGTCGGCTATGACCTTCCCAAGTTAAGCATTTTTCGATGTCAGCTTGCC
AGTTAATTGCATCAATATTGAAGTAGTGTAAGGAAGACCCATGGATGCCA
TTTCTCTCTACTTGCTCAATATTTGATTTGAATGAACTGGTATGTAAAAA
GTCACGAAGAACTGAAGTGCTCAGTGCGCGGACATGGGCACTTGGATGAA
AAAGGCATCGGATCGTTGCAGGTAAACAACACTTTAAAAGGTTTGAAAGA
CCATCTGC
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