CF833134

Overview
NameCF833134
Unique NameCF833134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8876 contig Csv1_Contig8876:353..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF833134 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.058e-35
Identity = 72/111 (64.86%), Postives = 86/111 (77.48%), Query Frame = 2 
Query:    5 DGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSNIEQ----VERNGIHGSSLHYFNIDAINWQADIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI 325
            DGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRD ++ SS    +       E+NG++  S  +FN  +I+W+ADI+ CL WEAHS L+T MP QFLD AA+ELGCTIS+
Sbjct: 1061 DGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFFNAASIDWKADIQNCLNWEAHSLLSTTMPTQFLDTAARELGCTISL 1171
[Close]
BLAST of CF833134 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 5.247e-31
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 2 
Query:    2 ADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSN--IEQVERNGIHGSSLHYFNIDAINWQADIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTIS 322
            ADGLSNLLKCRL  TIRCLSHPSAHVRALS SVLRD L++    S+  I+   RNGI   +        INWQAD+E+C+ WEAHSR ATG+ + FL  AAKELGC ++
Sbjct: 1051 ADGLSNLLKCRLSTTIRCLSHPSAHVRALSMSVLRDILNSGQINSSKLIQGEHRNGIQSPTYQCLAASIINWQADVERCIEWEAHSRRATGLTLAFLTAAAKELGCPLT 1159
The following BLAST results are available for this feature:
BLAST of CF833134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH2.058e-3564.86Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ5.247e-3160.55Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_03B07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833134 ID=CF833134; Name=CF833134; organism=Citrus sinensis; type=EST; length=469bp
TGCAGATGGTCTCTCTAACCTTTTAAAGTGTCGTCTACCTGCAACGATCC
GATGCCTTTCTCATCCAAGTGCCCATGTCCGCGCACTGAGCACTTCAGTT
CTTCGTGACTTTTTACATACCAGTTCATTCAAATCAAATATTGAGCAAGT
AGAGAGAAATGGCATCCATGGGTCTTCCTTACACTACTTCAATATTGATG
CAATTAACTGGCAAGCTGACATCGAAAAATGCTTAACTTGGGAAGCTCAT
AGCCGACTTGCAACAGGAATGCCGATTCAGTTTCTTGATATCGCTGCCAA
GGAATTAGGTTGTACAATATCTATATGAAATAAAATAACCTACAGCAGTC
ATTTGAGGTTTGTGATTATAATTTATTTTTCCAAGTGAGATTTATGGATG
GTAATAACCAGATCAATTGCTTTGAAAGATATCATTTGGTTTTTAAAAAA
AAAAAGAAAAGAAAAAATA
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