CF833135

Overview
NameCF833135
Unique NameCF833135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2111 contig Csv1_Contig2111:407..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833135 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.105e-17
Identity = 47/77 (61.04%), Postives = 53/77 (68.83%), Query Frame = -1
Query:  181 KVFHRNINSNGSISLDI*KEQRSRVLAISKVLVSMCSXXXXXXXXXXXXPEIGPMSKSDRNKLETSARSWTQKYTMG 411
            KVFH NINSNGSI LDI KEQ S  L ISKVL+S+CS            PEI  M K+D+NK E++ARSWTQKY MG
Sbjct:   72 KVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
BLAST of CF833135 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.361e-17
Identity = 48/77 (62.34%), Postives = 52/77 (67.53%), Query Frame = -1
Query:  181 KVFHRNINSNGSISLDI*KEQRSRVLAISKVLVSMCSXXXXXXXXXXXXPEIGPMSKSDRNKLETSARSWTQKYTMG 411
            KVFH NINSNGSI LDI KEQ S  L ISKVL+S+CS            PEI  M K+DR K ET+ARSWTQKY MG
Sbjct:   72 KVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of CF833135 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.144e-17
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = -1
Query:  181 KVFHRNINSNGSISLDI*KEQRSRVLAISKVLVSMCSXXXXXXXXXXXXPEIGPMSKSDRNKLETSARSWTQKYTMG 411
            KVFH NINSNGSI LDI KEQ S  L ISKVL+S+CS            PEI  M K+D+NK E++AR+WTQKY MG
Sbjct:   72 KVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of CF833135 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = -1
Query:  181 KVFHRNINSNGSISLDI*KEQRSRVLAISKVLVSMCSXXXXXXXXXXXXPEIGPMSKSDRNKLETSARSWTQKYTMG 411
            KV+H NINSNGSI LDI KEQ S  L ISKVL+S+CS            PEI  M K+DR+K E++ARSWTQKY MG
Sbjct:   72 KVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of CF833135 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.037e-16
Identity = 46/77 (59.74%), Postives = 52/77 (67.53%), Query Frame = -1
Query:  181 KVFHRNINSNGSISLDI*KEQRSRVLAISKVLVSMCSXXXXXXXXXXXXPEIGPMSKSDRNKLETSARSWTQKYTMG 411
            KVFH N+NSNGSI LDI KEQ S  L ISKVL+S+CS            PEI  M K+DR K E++ARSWTQKY MG
Sbjct:   72 KVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of CF833135 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.538e-16
Identity = 46/77 (59.74%), Postives = 51/77 (66.23%), Query Frame = -1
Query:  181 KVFHRNINSNGSISLDI*KEQRSRVLAISKVLVSMCSXXXXXXXXXXXXPEIGPMSKSDRNKLETSARSWTQKYTMG 411
            KVFH NINSNGSI LDI KEQ S  L ISKVL+S+CS            PEI  M K+DR K E +AR+WTQKY MG
Sbjct:   72 KVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of CF833135 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.018e-15
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = -1
Query:  181 KVFHRNINSNGSISLDI*KEQRSRVLAISKVLVSMCSXXXXXXXXXXXXPEIGPMSKSDRNKLETSARSWTQKYTMG 411
            KV+H NINSNGSI LDI KEQ S  L +SKVL+S+CS            PEI  + K+DR K E++A+SWTQKY MG
Sbjct:   72 KVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of CF833135 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  184 KVFHRNINSNGSISLDI*KEQRSRVLAISKVLVSMCSXXXXXXXXXXXXPEIGPMSKSDRNKLETSARSWTQKYTM 411
            KVFH NINSNG+I LDI K+Q S  L ISKVL+S+CS            PEI  + K+D+ K E  ARSWTQKY +
Sbjct:   72 KVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          
BLAST of CF833135 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  184 KVFHRNINSNGSISLDI*KEQRSRVLAISKVLVSMCSXXXXXXXXXXXXPEIGPMSKSDRNKLETSARSWTQKYTM 411
            +++H NINSNGSI LDI ++Q S  L ISKVL+S+CS            PEI  + K+DR++ E SAR WT+KY +
Sbjct:   72 RIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147          
BLAST of CF833135 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.785e-12
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = -1
Query:  184 KVFHRNINSNGSISLDI*KEQRSRVLAISKVLVSMCSXXXXXXXXXXXXPEIGPMSKSDRNKLETSARSWTQKYTM 411
            K++H NINSNG+I LDI K+Q S  L ISKVL+S+CS            PEI  + K DR K E +A+ WT+KY +
Sbjct:   72 KIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYAV 147          
The following BLAST results are available for this feature:
BLAST of CF833135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
UBC10_ARATH4.105e-1761.04Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC4_SOLLC5.361e-1762.34Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC9_ARATH9.144e-1759.74SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC11_ARATH1.560e-1659.74Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC28_ARATH2.037e-1659.74Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC8_ARATH4.538e-1659.74Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC30_ARATH5.018e-1555.84Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH7.245e-1453.95Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC4_SCHPO1.366e-1248.68Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC4_CANAL1.785e-1248.68Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03B09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833135 ID=CF833135; Name=CF833135; organism=Citrus sinensis; type=EST; length=411bp
AGTGACATTATCCATACAACAATTAAGAAGCCACCCGTTTCTCCTTTCCA
ATTCGGGGGATGTAGCGGACCTTTCTTATGGTCCACTTTTTATGATGGAA
CAGACAGAATATTCCTACATTAACTCCAAACCAAAATTAAAAAGAAAAGG
AACCCCCTCTCTCCCCATAACCCACGTTTAACCCATGGTATACTTCTGGG
TCCAGCTCCTTGCACTTGTCTCCAACTTGTTCCTGTCGGACTTGGACATG
GGACCAATTTCTGGTACCAACGGATCGTCGGGATTTGGATCCGGCAATAA
TGAACACATTGATACCAACACCTTGGAAATGGCAAGAACACGACTCCTTT
GTTCCTTCTAGATGTCAAGGGAAATGCTCCCATTGCTATTTATGTTACGA
TGAAATACCTT
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