CF833140

Overview
NameCF833140
Unique NameCF833140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13773 contig Csv1_Contig13773:21..578. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833140 vs. ExPASy Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 9.133e-51
Identity = 95/103 (92.23%), Postives = 96/103 (93.20%), Query Frame = -1
Query:  205 MVKVPKIKKTFCKSKECRKHPLHKVTQYKKGKDSLAAQGKRRYDGKQSGYGGQTKPVFPKKAKTTKKIVLRLQCQGCKHVFQHPIKRCKLFEIGGDKKGKGTS 513
            MV VPK KKT+CKSKECRKH LHKVTQYKKGKDSLAAQGKRRYD KQSGYGGQTKPVF KKAKTTKKIVLRLQCQGCKHV QHPIKRCK FEIGGDKKGKGTS
Sbjct:    1 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTS 103          
BLAST of CF833140 vs. ExPASy Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 3.591e-47
Identity = 88/103 (85.44%), Postives = 92/103 (89.32%), Query Frame = -1
Query:  205 MVKVPKIKKTFCKSKECRKHPLHKVTQYKKGKDSLAAQGKRRYDGKQSGYGGQTKPVFPKKAKTTKKIVLRLQCQGCKHVFQHPIKRCKLFEIGGDKKGKGTS 513
            MV +PK K T+CK+KEC+KH LHKVTQYKKGKDSLAAQGKRRYD KQSGYGGQTKPVF KKAKTTKKIVLRLQCQ CKH  Q PIKRCK FEIGGDKKGKGTS
Sbjct:    1 MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTS 103          
BLAST of CF833140 vs. ExPASy Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 3.600e-39
Identity = 74/103 (71.84%), Postives = 85/103 (82.52%), Query Frame = -1
Query:  205 MVKVPKIKKTFCKSKECRKHPLHKVTQYKKGKDSLAAQGKRRYDGKQSGYGGQTKPVFPKKAKTTKKIVLRLQCQGCKHVFQHPIKRCKLFEIGGDKKGKGTS 513
            MV VPK ++T+CK K C+KH  HKVTQYKKGKDS+ AQGKRRYD KQSGYGGQTKPVF KKAKTTKK+VLRL+C  CK+  Q  +KRCK FE+GGDKK KG +
Sbjct:    1 MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAA 103          
BLAST of CF833140 vs. ExPASy Swiss-Prot
Match: RL44_CRYNE (60S ribosomal protein L44 OS=Cryptococcus neoformans GN=RPL44 PE=3 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 8.019e-39
Identity = 74/103 (71.84%), Postives = 85/103 (82.52%), Query Frame = -1
Query:  205 MVKVPKIKKTFCKSKECRKHPLHKVTQYKKGKDSLAAQGKRRYDGKQSGYGGQTKPVFPKKAKTTKKIVLRLQCQGCKHVFQHPIKRCKLFEIGGDKKGKGTS 513
            MV +PK ++T+CK K CRKH  HKVTQYKKGKDSL+AQGKRRYD KQSGYGGQTKPVF KKAKTTKK+VLRL+C  CK   Q  +KRCK FE+GGDKK +G +
Sbjct:    1 MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAA 103          
BLAST of CF833140 vs. ExPASy Swiss-Prot
Match: RL44_COPCI (60S ribosomal protein L44 OS=Coprinopsis cinerea GN=RPL44 PE=3 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 2.333e-38
Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = -1
Query:  205 MVKVPKIKKTFCKSKECRKHPLHKVTQYKKGKDSLAAQGKRRYDGKQSGYGGQTKPVFPKKAKTTKKIVLRLQCQGCKHVFQHPIKRCKLFEIGGDKKGKGTS 513
            MV +PK ++T+CK K C+KH  HKVTQYKKGKDS+ AQGKRRYD KQSGYGGQTKPVF KKAKTTKK+VLRL+C  CK+  Q  +KRCK FE+GG+KK KG +
Sbjct:    1 MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAA 103          
BLAST of CF833140 vs. ExPASy Swiss-Prot
Match: RL44_COPC7 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPL44 PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.333e-38
Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = -1
Query:  205 MVKVPKIKKTFCKSKECRKHPLHKVTQYKKGKDSLAAQGKRRYDGKQSGYGGQTKPVFPKKAKTTKKIVLRLQCQGCKHVFQHPIKRCKLFEIGGDKKGKGTS 513
            MV +PK ++T+CK K C+KH  HKVTQYKKGKDS+ AQGKRRYD KQSGYGGQTKPVF KKAKTTKK+VLRL+C  CK+  Q  +KRCK FE+GG+KK KG +
Sbjct:    1 MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAA 103          
BLAST of CF833140 vs. ExPASy Swiss-Prot
Match: RL44_PICJA (60S ribosomal protein L44 OS=Pichia jadinii GN=RPL44 PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 8.866e-38
Identity = 75/101 (74.26%), Postives = 82/101 (81.19%), Query Frame = -1
Query:  211 MVKVPKIKKTFCKSKECRKHPLHKVTQYKKGKDSLAAQGKRRYDGKQSGYGGQTKPVFPKKAKTTKKIVLRLQCQGCKHVFQHPIKRCKLFEIGGDKKGKG 513
            MV VPK ++T+CK KECRKH  HKVTQYK GK SL AQGKRRYD KQSGYGGQTKPVF KKAKTTKK+VLRL+C  CK   Q  +KRCK FE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKG 101          
BLAST of CF833140 vs. ExPASy Swiss-Prot
Match: RL44_PICCI (60S ribosomal protein L44 OS=Pichia ciferrii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 8.866e-38
Identity = 75/101 (74.26%), Postives = 82/101 (81.19%), Query Frame = -1
Query:  211 MVKVPKIKKTFCKSKECRKHPLHKVTQYKKGKDSLAAQGKRRYDGKQSGYGGQTKPVFPKKAKTTKKIVLRLQCQGCKHVFQHPIKRCKLFEIGGDKKGKG 513
            MV VPK +KT+CK KECRKH  HKVTQYK GK SL AQGKRRYD KQSGYGGQTKPVF KKAKTTKK+VLRL+C  CK   Q  +KRCK FE+GGD+K KG
Sbjct:    1 MVNVPKTRKTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDRKQKG 101          
BLAST of CF833140 vs. ExPASy Swiss-Prot
Match: RL44_CANGY (60S ribosomal protein L44 OS=Candida glycerinogenes GN=RPL44 PE=3 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 8.866e-38
Identity = 73/103 (70.87%), Postives = 83/103 (80.58%), Query Frame = -1
Query:  205 MVKVPKIKKTFCKSKECRKHPLHKVTQYKKGKDSLAAQGKRRYDGKQSGYGGQTKPVFPKKAKTTKKIVLRLQCQGCKHVFQHPIKRCKLFEIGGDKKGKGTS 513
            MV VPK +KT+CK K+C+KH  HKVTQYK GK SL +QGKRRYD KQSGYGGQTKPVF KKAKTTKK+VLRL+C  CK   Q  +KRCK FE+GGDKK KG +
Sbjct:    1 MVNVPKTRKTYCKGKQCKKHTQHKVTQYKAGKASLYSQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVACKTKLQLSLKRCKHFELGGDKKQKGAA 103          
BLAST of CF833140 vs. ExPASy Swiss-Prot
Match: RL44P_CANMA (60S ribosomal protein L44 P OS=Candida maltosa GN=L41P1A PE=3 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.512e-37
Identity = 74/101 (73.27%), Postives = 82/101 (81.19%), Query Frame = -1
Query:  211 MVKVPKIKKTFCKSKECRKHPLHKVTQYKKGKDSLAAQGKRRYDGKQSGYGGQTKPVFPKKAKTTKKIVLRLQCQGCKHVFQHPIKRCKLFEIGGDKKGKG 513
            MV VPK +KT+CK +ECRKH  HKVTQYK GK SL AQGKRRYD KQSG+GGQTKPVF KKAKTTKK+VLRL+C  CK   Q  +KRCK FE+GGDKK KG
Sbjct:    1 MVNVPKTRKTYCKGRECRKHSQHKVTQYKAGKSSLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKG 101          
The following BLAST results are available for this feature:
BLAST of CF833140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL44_GOSHI9.133e-5192.2360S ribosomal protein L44 OS=Gossypium hirsutum GN... [more]
RL36A_ARATH3.591e-4785.4460S ribosomal protein L36a OS=Arabidopsis thaliana... [more]
RL44_PHARH3.600e-3971.8460S ribosomal protein L44 OS=Phaffia rhodozyma GN=... [more]
RL44_CRYNE8.019e-3971.8460S ribosomal protein L44 OS=Cryptococcus neoforma... [more]
RL44_COPCI2.333e-3869.9060S ribosomal protein L44 OS=Coprinopsis cinerea G... [more]
RL44_COPC72.333e-3869.9060S ribosomal protein L44 OS=Coprinopsis cinerea (... [more]
RL44_PICJA8.866e-3874.2660S ribosomal protein L44 OS=Pichia jadinii GN=RPL... [more]
RL44_PICCI8.866e-3874.2660S ribosomal protein L44 OS=Pichia ciferrii GN=RP... [more]
RL44_CANGY8.866e-3870.8760S ribosomal protein L44 OS=Candida glycerinogene... [more]
RL44P_CANMA1.512e-3773.2760S ribosomal protein L44 P OS=Candida maltosa GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03B12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833140 ID=CF833140; Name=CF833140; organism=Citrus sinensis; type=EST; length=558bp
TTTTTTTTTTTTTTTTTGGTCAAAAATCCAATTCTAAAATTCACTTATAA
AATAAGCACTTAACTAACAACCGCTTCAAGTTTTAAATTAACAGCATCAA
ACTAACCCAACAAAACTAAAACAAATATTCTCATACTGGGTAAAGTTCCA
TCAAGTGCATCAAAGTAAAAAGCATACCAACAAAAATAAAGGCATTTAGA
AAAGAGATGTTCCCTTTCCCTTCTTGTCTCCACCAATTTCAAAGAGCTTG
CACCTCTTGATGGGATGTTGAAACACATGCTTGCAACCCTGGCATTGGAG
CCTCAGCACAATCTTCTTGGTGGTCTTAGCCTTCTTGGGGAAAACAGGCT
TGGTCTGACCACCATAACCAGACTGTTTACCATCATACCGTCTCTTCCCT
TGAGCAGCAAGACTGTCCTTGCCCTTCTTGTACTGTGTCACCTTGTGCAA
GGGGTGCTTTCTGCACTCCTTGCTCTTGCAGAAGGTCTTCTTAATCTTGG
GAACCTTCACCATGATGGCCGGCGGCGGCGACTAGGAGGTGAGAGCTCTT
CTTAACTT
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