CF833155

Overview
NameCF833155
Unique NameCF833155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF833155_ssr554 microsatellite CF833155_ssr554:554..565. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13728 contig Csv1_Contig13728:549..1300. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833155 vs. ExPASy Swiss-Prot
Match: YCO6_SCHPO (Putative nucleosome assembly protein C364.06 OS=Schizosaccharomyces pombe GN=SPCC364.06 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.912e-27
Identity = 72/178 (40.45%), Postives = 93/178 (52.25%), Query Frame = 2
Query:    2 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEP----ILEKAIGTEIEWYPGXXXXXXXXXXXXXXXXXXXXPITKTE-ECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAI 520
            P+FWLTAMKN   LSE IT  DEGAL  L DI+   ++ P GFKLEF F  NP+F N +LTKTY+ ++E  P    + + A G +++W                        + K     +SFFNFFNPP  P             L   +E DY IG   ++K+IP AV WFTGEA+
Sbjct:  165 PEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEFAENPFFTNKILTKTYYYMEESGPSNVFLYDHAEGDKVDWKENADLTVRTVTKKQRNKNTKQTRVVKVSVPRDSFFNFFNPPTPP--SEEDEESESPELDELLELDYQIGEDFKEKLIPRAVEWFTGEAL 339          
BLAST of CF833155 vs. ExPASy Swiss-Prot
Match: NP1L1_PONAB (Nucleosome assembly protein 1-like 1 OS=Pongo abelii GN=NAP1L1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 72/186 (38.71%), Postives = 95/186 (51.08%), Query Frame = 2
Query:    2 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIK--WFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 523
            P+FWLT  KN D+LS+ + E DE  LK LKDIK  +     P  F LEF+F+PN YF N VLTKTY M  E         D P +    G +I+W  G                      +TKT   +SFFNFF PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  168 PEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSGAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVP-----ESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIE 348          
BLAST of CF833155 vs. ExPASy Swiss-Prot
Match: NP1L1_MOUSE (Nucleosome assembly protein 1-like 1 OS=Mus musculus GN=Nap1l1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 73/186 (39.25%), Postives = 95/186 (51.08%), Query Frame = 2
Query:    2 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRID--DPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 523
            P+FWLT  KN D+LS+ + E DE  LK LKDIK    D   P  F LEF+F+PN YF N VLTKTY M  E         D P +    G +I+W  G                      +TKT   +SFFNFF PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  168 PEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNDYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVP-----ENGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIE 348          
BLAST of CF833155 vs. ExPASy Swiss-Prot
Match: NP1L1_HUMAN (Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 73/186 (39.25%), Postives = 95/186 (51.08%), Query Frame = 2
Query:    2 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRID--DPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 523
            P+FWLT  KN D+LS+ + E DE  LK LKDIK    D   P  F LEF+F+PN YF N VLTKTY M  E         D P +    G +I+W  G                      +TKT   +SFFNFF PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  168 PEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVP-----ESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIE 348          
BLAST of CF833155 vs. ExPASy Swiss-Prot
Match: NP1L1_BOVIN (Nucleosome assembly protein 1-like 1 OS=Bos taurus GN=NAP1L1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.709e-26
Identity = 73/186 (39.25%), Postives = 95/186 (51.08%), Query Frame = 2
Query:    2 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRID--DPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 523
            P+FWLT  KN D+LS+ + E DE  LK LKDIK    D   P  F LEF+F+PN YF N VLTKTY M  E         D P +    G +I+W  G                      +TKT   +SFFNFF PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  168 PEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDS-----EAILAADFEIGHFLRERIIPRSVLYFTGEAIE 348          
BLAST of CF833155 vs. ExPASy Swiss-Prot
Match: NPL1A_XENLA (Nucleosome assembly protein 1-like 1-A OS=Xenopus laevis GN=nap1l1-A PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.370e-25
Identity = 73/186 (39.25%), Postives = 94/186 (50.54%), Query Frame = 2
Query:    2 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRID--DPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 523
            P+FWLT  KN D+LS+ + E DE  LK LKDIK    D   P  F LEFYF+PN +F N VLTKTY M  E         D P +    G  I+W  G                      +TKT   +SFFNFF PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  168 PEFWLTVFKNVDLLSDMLQEHDEPILKHLKDIKVKFSDAGQPMSFTLEFYFEPNEFFTNEVLTKTYKMRSEPDESDPFSFDGPEIMGCTGCLIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVPNDSFFNFFTPPEVP-----ENGELDDDAEAILTADFEIGHFLRERIIPRSVLYFTGEAIE 348          
BLAST of CF833155 vs. ExPASy Swiss-Prot
Match: NP1L1_XENTR (Nucleosome assembly protein 1-like 1 OS=Xenopus tropicalis GN=nap1l1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.789e-25
Identity = 71/186 (38.17%), Postives = 95/186 (51.08%), Query Frame = 2
Query:    2 PDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 523
            P+FWLT  KN D+LS+ + E DE  LK LKDI  K+     P  F LEF+F+PN +F N VLTKTY M  E         D P +    G  I+W  G                      +TKT   +SFFNFF+PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  169 PEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSEAGQPMSFTLEFHFEPNDFFTNEVLTKTYKMRSEPDESDPFSFDGPEIMGCTGCLIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVPNDSFFNFFSPPEVP-----ENGELDDDAEAILTADFEIGHFLRERIIPRSVLYFTGEAIE 349          
BLAST of CF833155 vs. ExPASy Swiss-Prot
Match: NPL1B_XENLA (Nucleosome assembly protein 1-like 1-B OS=Xenopus laevis GN=nap1l1-B PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.986e-25
Identity = 70/186 (37.63%), Postives = 95/186 (51.08%), Query Frame = 2
Query:    2 PDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 523
            P+FWLT  KN D+LS+ + E DE  LK LKDI  K+     P  F LEF+F+PN +F N +LTKTY M  E         D P +    G  I+W  G                      +TKT   +SFFNFF+PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  169 PEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSEAGQPMNFMLEFHFEPNEFFTNELLTKTYKMRSEPDESDPFSFDGPEIMGCTGCLIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVPNDSFFNFFSPPEVP-----ENGELDDDAEAILTADFEIGHFLRERIIPRSVLYFTGEAIE 349          
BLAST of CF833155 vs. ExPASy Swiss-Prot
Match: NP1L1_RAT (Nucleosome assembly protein 1-like 1 OS=Rattus norvegicus GN=Nap1l1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.515e-24
Identity = 73/186 (39.25%), Postives = 94/186 (50.54%), Query Frame = 2
Query:    2 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRID--DPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 523
            P+FWLT  KN D+LS+ + E DE  LK LKDIK    D   P  F LEF+F+PN YF N VLTKTY M  E         D P +    G +I+W  G                      +TKT    SFFNFF PP+VP              +  +  D++IG  +R++IIP +V +FTGEAI+
Sbjct:  168 PEFWLTVFKN-DLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFILEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSKTSFFNFFAPPEVP-----ENGDLDDDXEAILAADFEIGHFLRERIIPRSVLYFTGEAIE 347          
BLAST of CF833155 vs. ExPASy Swiss-Prot
Match: NP1L4_HUMAN (Nucleosome assembly protein 1-like 4 OS=Homo sapiens GN=NAP1L4 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.418e-22
Identity = 71/186 (38.17%), Postives = 90/186 (48.39%), Query Frame = 2
Query:    2 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRID--DPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDE---------PILEKAIGTEIEWYPG-XXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 523
            P+FW T  +N D+LSE + E DE  LK L+DIK    D   P  F LEF+F+PN YF NSVLTKTY M  E +         P +    G  I+W  G                      ITK    ESFFNFFNP +               L +    D++IG   R++I+P AV +FTGEAI+
Sbjct:  160 PEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPNDYFTNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPNESFFNFFNPLKASGDGESLDEDSEFTLAS----DFEIGHFFRERIVPRAVLYFTGEAIE 341          
The following BLAST results are available for this feature:
BLAST of CF833155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
YCO6_SCHPO1.912e-2740.45Putative nucleosome assembly protein C364.06 OS=Sc... [more]
NP1L1_PONAB4.709e-2638.71Nucleosome assembly protein 1-like 1 OS=Pongo abel... [more]
NP1L1_MOUSE4.709e-2639.25Nucleosome assembly protein 1-like 1 OS=Mus muscul... [more]
NP1L1_HUMAN4.709e-2639.25Nucleosome assembly protein 1-like 1 OS=Homo sapie... [more]
NP1L1_BOVIN4.709e-2639.25Nucleosome assembly protein 1-like 1 OS=Bos taurus... [more]
NPL1A_XENLA1.370e-2539.25Nucleosome assembly protein 1-like 1-A OS=Xenopus ... [more]
NP1L1_XENTR1.789e-2538.17Nucleosome assembly protein 1-like 1 OS=Xenopus tr... [more]
NPL1B_XENLA3.986e-2537.63Nucleosome assembly protein 1-like 1-B OS=Xenopus ... [more]
NP1L1_RAT1.515e-2439.25Nucleosome assembly protein 1-like 1 OS=Rattus nor... [more]
NP1L4_HUMAN1.418e-2238.17Nucleosome assembly protein 1-like 4 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_03B21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833155 ID=CF833155; Name=CF833155; organism=Citrus sinensis; type=EST; length=752bp
GCCGGACTTCTGGCTTACTGCAATGAAAAATAATGATGTCCTATCTGAGG
AAATTACTGAGCGCGATGAAGGAGCTCTCAAGTTTCTCAAAGACATTAAG
TGGTTTAGGATTGATGATCCAAAGGGATTCAAGCTTGAATTCTACTTTGA
CCCCAATCCATACTTCAAGAACTCTGTCTTGACAAAGACTTATCACATGA
TTGATGAAGATGAGCCTATTCTTGAGAAAGCTATAGGGACGGAGATTGAA
TGGTATCCAGGGAAATGCTTGACACAGAAGCTCCTTAAGAAGAAGCCAAA
GAAGGGATCAAAGAATGCTAAGCCAATTACTAAAACTGAAGAATGTGAAA
GTTTTTTCAACTTTTTCAATCCACCTCAAGTCCCTGAAGATGATGAAGAC
ATTGATGAAGATACTGCTGAGGAGCTTCAAAATCAAATGGAACAAGATTA
CGATATTGGATCAACAATTAGAGACAAGATTATCCCCCATGCTGTTTCAT
GGTTTACTGGGGAAGCTATTCAGGAGGAAGAGATTGAGTTGGATGATGAT
GAAGATGATGATGATATTGATGAGGATGAAGACGACGAGGGAGATGATGA
CGAAGATGAGGATGAAGATGACGAGGAGGATGAGGAGGATGATGAAGGCA
AGACCAAAAAGAAGAAGAGTGGAAGACAACAAGCTGGGGATGCTCAGCAG
GGTGAAAGGCCTCCAGAATGCAAGCAGCAGTAGATTTTGGTTTGGATTGG
CA
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