CF833171

Overview
NameCF833171
Unique NameCF833171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833171 vs. ExPASy Swiss-Prot
Match: Y2179_DICDI (Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Dictyostelium discoideum GN=DDB_G0282179 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.864e-15
Identity = 43/138 (31.16%), Postives = 73/138 (52.90%), Query Frame = -3
Query:  282 LILFACFLLLVCSTQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYF------GVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSF 677
            L+L   F+L++     I   YCD   N    I ++ ++PDP + GK  T ++     + +  G  + NVA+F       +P      D+C+ +SCP++AG F  S +  +P FTP G Y  ++T+ D++N  +TC +F
Sbjct:    6 LLLLINFMLILIVNGDIW-NYCDGNINPTFKINKLTLLPDPPLVGKEVTISLEGSLNEQITSGSSIFNVAFFINGGWRQLPTFHN--DICKVLSCPVSAGPFTYSTSIKVPIFTPHGQYKGQLTLTDQSNRNVTCLTF 140          
BLAST of CF833171 vs. ExPASy Swiss-Prot
Match: Y8295_DICDI (Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0278295 OS=Dictyostelium discoideum GN=DDB_G0278295 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.279e-11
Identity = 34/108 (31.48%), Postives = 56/108 (51.85%), Query Frame = -3
Query:  270 IQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVC---EEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKI 584
            I  V + P   V G+  T + S +  + V GG V + V Y  + +  E   +C   + ++CPIAAGD+  + T+ +PS  P G YT  + + D+NN E+ C   +  +
Sbjct:   34 ITNVVLDPPTPVKGQDITISASGILDETVTGGNVAVKVKYGFITLINENVSICSSQDPLACPIAAGDYQKNMTEMIPSDAPSGKYTGNVVITDQNNAEIACIDVDINL 141          
BLAST of CF833171 vs. ExPASy Swiss-Prot
Match: NPC22_DICDI (Putative phosphatidylglycerol/phosphatidylinositol transfer protein 2 OS=Dictyostelium discoideum GN=DDB_G0282109 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 38/131 (29.01%), Postives = 66/131 (50.38%), Query Frame = -3
Query:  291 LFACFLLLVCSTQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVC----EEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTC 671
            L+   LL++ ++ + G  + +   N    I  V I+PDP V GK  T + S V G+ +  G+V I V +  + +  E +D+C        CPI  G++  +   T+P   P G YT  +++ D+ + E+ C
Sbjct:    5 LYLSILLILLTSTSFGDIWSNCGPNEKFKITSVSIVPDPPVKGKLITISGSGVLGENLTSGQVAILVKFGLITLINEKKDICTLPGSPYKCPIKEGEYSHTINFTIPEAAPNGKYTGHVSVTDQESSEIAC 135          
The following BLAST results are available for this feature:
BLAST of CF833171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y2179_DICDI2.864e-1531.16Putative phosphatidylglycerol/phosphatidylinositol... [more]
Y8295_DICDI4.279e-1131.48Putative phosphatidylglycerol/phosphatidylinositol... [more]
NPC22_DICDI9.533e-1129.01Putative phosphatidylglycerol/phosphatidylinositol... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_03C09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa03C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833171 ID=CF833171; Name=CF833171; organism=Citrus sinensis; type=EST; length=754bp
TTTCGCGAATCAAGTCCATTCACGTCTTTCCCCTTCAGAAGAAATGCAAC
ACACAGACAGAACACAGATTACCGATACCAATCTTACAAGAATCTTACAA
CATCAAACACCATCGAACACAGAACTAAAATAATATACAAGCAGCCACAT
AGAGCGCACACTTGTTTACATTGGGTTGGCGTTAAGGATGAACTTGACCG
TTCGAAACGCAAGAGATCATAATACGGTACCGGGCACTTTTAACTATCAG
AGACCAGAGAATGAAAGCCAATTTTGAAGTTGAAGCTAAAGCAAGTCAGT
TCTTCATTGTTCTTGTCCTCCATTGTCATCTTAAGTGTGTAGGAGCCCGG
AGGAGTGAAACTAGGCAGAGTCTGGGTGTGGGACAGTACAAAGTCTCCTG
CTGCAATGGGACACGATACCTCCTCACAAACGTCACGGGTTTCTTGATGG
ACAGGTACCCCAAAGTAAGCAACATTTATCACCACTTTCCCACCATAGAC
AGCTTGACCTGTAACAGCCGAGATGTTAAAGGTGGCTGGCTTGCCTGTGA
CTACAGGATCAGGAATTATCTTAACTTGCTGAATCGTTACAGCGTAGTTT
TTCTTCTTATCGCAGTATTTGACACCTATGGCTTGAGTGGAACAAACTAG
AAGAAGAAAACAAGCGAACAGGATCAACTGACGGTCCATGGCTTCAGCTA
AGATGATGAAGTGATGATGACGACGACGACAACTTGAAAGTTGCAGGAAC
TGAG
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