CF833753

Overview
NameCF833753
Unique NameCF833753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length428
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833753 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.013e-15
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = -1
Query:  237 G*SYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 419
            G  + +D LT+VKA++NN GK  AL+QHE +PKSL TIS+EVDTKA+EK+ + G+AIALKP
Sbjct:  215 GTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275          
BLAST of CF833753 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.167e-14
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = -1
Query:  237 FPVG*SYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 428
            F +G  +A+D LT VK ++ N GK  AL+QHE  PKSL+TISSEVDTKA+EK+ + GL++ALKP
Sbjct:  213 FTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276          
BLAST of CF833753 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.397e-14
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = -1
Query:  237 VG*SYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 422
            VG  + +D LT VKA++NN GK  ALLQHE  PKSL T+S EVDTK+++K  +FGLA+ALKP
Sbjct:  215 VGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276          
BLAST of CF833753 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.436e-14
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = -1
Query:  237 VG*SYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 422
            +G  + +D LT VKA++N++GK  AL+QHE  PKSL TIS EVDT+A+EK+ + GLA+ALKP
Sbjct:  215 IGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276          
BLAST of CF833753 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.567e-14
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = -1
Query:  237 G*SYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 419
            G  + +D LTVVKA+ NN GK  ALLQHE  PKS+ TIS+EVDTKA++K+ + G+A+ALKP
Sbjct:  214 GTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274          
BLAST of CF833753 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 1.427e-12
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = -1
Query:  237 VG*SYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 422
            VG  +A+D LT VKA++NN G   AL+QHE  PKS  T+S EVD+KA++K+ + G+A+ALKP
Sbjct:  213 VGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274          
BLAST of CF833753 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 9.251e-12
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = -1
Query:  237 VG*SYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEVDTKALEKTPRFGLAIALKP 422
            VG  +++D LT VKA++N+ G   AL+QHE  PKS  TIS EVDTK+++K+ + GLA+ALKP
Sbjct:  215 VGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276          
The following BLAST results are available for this feature:
BLAST of CF833753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
VDAC1_WHEAT4.013e-1562.30Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_PEA1.167e-1459.38Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_SOLTU3.397e-1461.29Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC2_SOLTU4.436e-1458.06Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_ORYSJ7.567e-1460.66Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC2_ARATH1.427e-1254.84Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_ARATH9.251e-1254.84Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_04D03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833753 ID=CF833753; Name=CF833753; organism=Citrus sinensis; type=EST; length=428bp
TTTTTTTTTTTTTTTGCCAAATGCCGCTGCAAATTTCCAAGAAAACCGTT
CAAAATAGAGAAATAGATGACCATGGTATCACCTAACCCTCAAAACAATT
AATCCACAGTTACCAAGAACCTAGAAACAAATTTATCTTGGAACTCCTTA
TTGACGACACTTCTCAAGTATCACCATTAAATTGGAAAACCTCTAAAATT
CCAACAATGCATCATTTGCCTGGAAGAGGATCATCAGGGCTTGAGGGCAA
TGGCCAAACCAAACCTAGGAGTTTTCTCCAACGCCTTAGTGTCAACCTCA
CTAGAAATCGTAAGCAATGATTTTGGAATAACCTCATGCTGCAGCAGCGC
ACCAAGCTTTCCATGGTTGTTGAGCTTTGCCTTCACTACTGTGAGGTGAT
CAACAGCATATGATCATCCAACTGGAAA
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