CF833807

Overview
NameCF833807
Unique NameCF833807
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF833807 vs. ExPASy Swiss-Prot
Match: AXR4_ARATH (Protein AUXIN RESPONSE 4 OS=Arabidopsis thaliana GN=AXR4 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-27
Identity = 64/129 (49.61%), Postives = 80/129 (62.02%), Query Frame = -1 
Query:  252 GSLEGIKGIPMQKLWFSVWFKEWSEEGS*VGDALPQAKFVGHSGGRWPQVDFADELGKPIADFVFFLPKTVRQVEEEPIPEHIQKMFDEVXXXXXXXXXXXXXXXXXXHEGHGHG-AGYMDAYGVGQTW 635
            G+ +GI GIPMQ +W S   KEWS+EG  V  ALP+AKFV HSG RWPQ   + EL   I++FV  LPK++R+V EEPIPE +QK+ +E                   H GHGH  AGY DAYG+G+ W
Sbjct:  352 GNSDGINGIPMQVIWSSEASKEWSDEGQRVAKALPKAKFVTHSGSRWPQESKSGELADYISEFVSLLPKSIRRVAEEPIPEEVQKVLEEA----------KAGDDHDHHHGHGHAHAGYSDAYGLGEEW 470
The following BLAST results are available for this feature:
BLAST of CF833807 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AXR4_ARATH1.075e-2749.61Protein AUXIN RESPONSE 4 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_04E22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833807 ID=CF833807; Name=CF833807; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTTCCCCCCTTCAAGCTTAAAAATAATCATATTTTA
ATTCCCCCAAACCAGGGGGTTGTTCATTTTCAATGTAATAATAAACAAAA
AACCTTTCCAGGAGGAATAAAAACTACAAAAGGATAAAATTAAAAACTTG
TTCCAGAAATAAAAAAAGCTTTTCCTATTGTAGGAAGGGAAATGCCTGAC
CTCCTTTTGACAGTTAACTATTATAAAAAAAATGAAAACAGATCTTTGAC
CCCATGTTTGGCCAACCCCGTAAGCATCCATATACCCTGCCCCATGACCA
TGACCTTCATGGTTGTCATGGCCACTGTGACTATAATGATGGCCGTGATT
ATGGCCACTGCTACTAACTTCATCAAACATCTTCTGTATATGCTCGGGTA
TGGGCTCTTCCTCAACTTGTCTAACAGTTTTTGGTAAAAAAAAAACAAAA
TCAGCAATGGGCTTACCTAGTTCATCAGCAAAGTCTACCTGAGGCCAACG
TCCTCCTGAATGTCCCACAAATTTTGCCTGCGGAAGTGCATCCCCAACTC
AACTTCCTTCCTCACTCCATTCCTTAAACCAAACACTAAACCAAAGTTTT
TGCATCGGTATTCCTTTTATCCCCTCCAAACTGCC
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