CF833852

Overview
NameCF833852
Unique NameCF833852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF833852 vs. ExPASy Swiss-Prot
Match: RS30_ARATH (40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.496e-16
Identity = 41/54 (75.93%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:   20 SLARAGKERGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 181
            SLARAGK RGQTP          PRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct:    7 SLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60
The following BLAST results are available for this feature:
BLAST of CF833852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RS30_ARATH3.496e-1675.9340S ribosomal protein S30 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_04G02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833852 ID=CF833852; Name=CF833852; organism=Citrus sinensis; type=EST; length=299bp
ATGGGTAAGGGTTCCTTTATCTTTGGCTCGTGCCGGTAAGGAGAGAGGCC
AAACTCCTAAAGTTGCTAAACAGGATAAGAAGAAGAAGCCACGGGGCCGC
GCCCACAAGCGCATGCAATACAACCGCCGCTTCGTCACCGCAGTGGTTGG
TTTTGGAAAGAAAAGAGGACCCAACTCATCTGAGAAGCCAAAGGAGGAGC
CAAATAAGGAAGAGCCGAAGAAGGAAGAGGAAACTAAGAAAGAAGAGCCA
AAGAAAGAAGAAGAAGCTAAGAAAGAAGAGCCCAAAAAAAAAAAAAAAA
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