CF833868

Overview
NameCF833868
Unique NameCF833868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833868 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.007e-31
Identity = 86/186 (46.24%), Postives = 102/186 (54.84%), Query Frame = -1
Query:  333 ACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCG---GSPTPTSDDVSEAEVTCTDMSRLQDXXXXXXXXXXXXXXXXXXXXXXXXVEE-------SAMKLQQSDLDLRLTPRFTGK--VPPEVRRRPGTPSMNSEESGTTT-----CFESGLTDHRYLNGAEERKLLNLFV 839
            ACGRTVNPVNGA+G+LWTGNW++CQAAVETVLRGG+LRP+PELL   G   G P+PTS++ SE    CT+M  LQ                                   S+     S+LDL L P F  K   P   RRR  TPSMNSE+SGTTT     C +  +  +    G E  KLLNLFV
Sbjct:   71 ACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGFAGFPSPTSEEASE---ICTEMLNLQQNDSTDRNIYHHSRFSSSRSRSTMDSSSPTKRKRLSSEDQPSSELDLSLIPNFPIKQATPSSTRRRSVTPSMNSEDSGTTTTTTAFCDKGDVYGN---GGGETTKLLNLFV 250          
BLAST of CF833868 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.453e-29
Identity = 83/182 (45.60%), Postives = 99/182 (54.40%), Query Frame = -1
Query:  336 ACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCG--GSPTPTSDDVSEAEVTCTDMSRLQDXXXXXXXXXXXXXXXXXXXXXXXXVEE-------SAMKLQQSDLDLRLTPRFTGKVPPEVRRRPGTPSMNSEESGTTTCFESGLTDHRYL-----NGAEERKLLNLF 839
            ACGRTVNPVNGAVGLLWTGNW+VCQAAVETVLRGG+L+P+PELLN  G  G P+PTSD+ SE    CT+M  L+                                   S+ +   S+LDL L P +  K  P    +  TPSM SEES TT  F++     RY+      G    KLLNLF
Sbjct:   71 ACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASE---ICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQQPSSELDLSLIPIYPIKTLP---FKEDTPSMYSEESVTTVSFQNNNAGDRYVRCGGGGGGATTKLLNLF 246          
BLAST of CF833868 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.540e-23
Identity = 75/177 (42.37%), Postives = 94/177 (53.11%), Query Frame = -1
Query:  333 ACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPVPELLNSCGGSPTPTSDDVSEAEVTCTDMSRLQDXXXXXXXXXXXXXXXXXXXXXXXXVEESAMKLQQSD-LDLRLTPRFTGKVPPEV------RRRPGTPSMNSEESGTTTCFESGLT-DHRYLNGAEERKLLNLFV 839
            ACGRTVNPVNGAVG+LWT NWHVCQAAVETVLRGGTLRP+ +LL S    P+        +E+   D+SR Q                           +S + LQ +  L L         +PP          RPG+PS   EES TT+C+E+G+  D++      E+KLLNLFV
Sbjct:   71 ACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLES----PSLMISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLTAPAVPVPFLPPSSFCKVVKGDRPGSPS---EESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV 240          
BLAST of CF833868 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.934e-11
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = -1
Query:  720 ACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPV 839
            ACGR VNP+ G+VGLLW+GNWH+CQAAVE V+RG  + P+
Sbjct:   73 ACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPI 112          
The following BLAST results are available for this feature:
BLAST of CF833868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LBD37_ARATH2.007e-3146.24LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD38_ARATH2.453e-2945.60LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD39_ARATH1.540e-2342.37LOB domain-containing protein 39 OS=Arabidopsis th... [more]
LBD40_ARATH3.934e-1167.50LOB domain-containing protein 40 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_04G19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833868 ID=CF833868; Name=CF833868; organism=Citrus sinensis; type=EST; length=839bp
TTTTTTTTTTTTTTTTTAATCGGCAATAATTTCATTTTATTCATGCCATA
CACATAACTAAACACATAATAAAAATTTATTAAAAAAAGAAAAGAAAAGA
AAAGAAAAAGAGAGTCATCACCGACAAATTCACCTTCCTCTCTTCCCGTT
TGGATAAATCAAAGAGAGAAATCCTCTGACGGTAATTATACAAAAACTCG
CCGGAATCAGTTTCCGGGAAAATTCTCTCAAAAGTAAACCAAAAACTAAG
GATAATAGTACAACTCTTCTTCGTGAACATAAATTCACAGAGTTAAAAGT
GGAAGAAACTAATTAAGGATAATATTTGCTCAAACGAACAAGTTGAGTAA
TTTCCTCTCCTCAGCTCCATTGAGATATCGATGATCTGTTAACCCACTTT
CGAAGCACGTAGTGGTGCCTGATTCCTCCGAATTCATCGACGGAGTACCA
GGTCGCCGCCTGACTTCCGGCGGAACCTTGCCCGTAAACCTTGGCGTCAA
GCGAAGATCCAGATCTGACTGTTGCAATTTCATTGCTGATTCTTCCACTC
TCTTACGTTTAGCTGGTGACACCTTGGATCTTGAACTCGAGAATCTACAA
TGAGAACTTGGAAACGACCGATCTTGCAACCTAGACATGTCCGTGCAAGT
CACTTCAGCTTCCGATACATCGTCGGAAGTTGGTGTTGGCGATCCGCCGC
AGCTGTTGAGAAGCTCCGGCACCGGACGCAACGTGCCGCCTCGGAGGACA
GTTTCCACGGCAGCCTGGCAAACATGCCAGTTCCCCGTCCACAAAAGACC
TACAGCTCCATTCACAGGATTCACAGTTCGGCCACAGGC
back to top