CF834241

Overview
NameCF834241
Unique NameCF834241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834241 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.924e-31
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = -3
Query:  256 VEADEHTVNSSKGTGYPKPTIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 498
            ++ D+ T N+     Y    IDCGGAC ARCRLSSRP LC+RACGTCCARCNCVPPGT+GNTE CPCYA++TTH  +RKCP
Sbjct:   24 IQTDQVTSNAISEAAYSYKKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
BLAST of CF834241 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.069e-28
Identity = 58/82 (70.73%), Postives = 62/82 (75.61%), Query Frame = -3
Query:  256 LVEADEHTVNSSKGTGYPKPTIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 501
            LV+AD    NS K  GY K  IDCG AC ARCRLS RP LCHRACGTCC RCNCVPPGT GN + C CYA++TTH GRRKCP
Sbjct:   20 LVQADVE--NSQKKNGYAKK-IDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of CF834241 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.925e-24
Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = -3
Query:  256 NSSKGTGYPKPTIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 474
            +S  G G  K  IDCGG C+ RC  SSRPNLC RAC +CC RCNCVPPGTAGN  +CPCYA++TT  GR KCP
Sbjct:   29 DSQVGEGVVK--IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of CF834241 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.925e-24
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = -3
Query:  256 EADEHTVNSSK-GTGYPKPTIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 495
            E   H  + +K G G  K  IDCGG C+ RC  SSR  LC RAC +CC+RCNCVPPGT+GNT +CPCYA++TTH GR KCP
Sbjct:   21 ELHVHAADGAKVGEGVVK--IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of CF834241 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 32/73 (43.84%), Postives = 37/73 (50.68%), Query Frame = -3
Query:  256 NSSKGTGYPKPTIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 474
            N  +G    +PT DC   C  RC  +S    C   C  CCA C CVP G  GN + CPCY N  T  G+ KCP
Sbjct:   25 NVVEGYNKLRPT-DCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of CF834241 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.644e-11
Identity = 32/71 (45.07%), Postives = 38/71 (53.52%), Query Frame = -3
Query:  256 SKGTGYPKPTIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 468
            S+G  +P+   DC   C  RC  +S    C   C  CCA+C CVP GT GN + CPCY N  T  G  KCP
Sbjct:   45 SEGRLHPQ---DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CF834241 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.891e-11
Identity = 25/59 (42.37%), Postives = 31/59 (52.54%), Query Frame = -3
Query:  256 CGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 432
            C   C+ RC  +   + C + CG CC  C CVP GT GN   CPCY +     G+ KCP
Sbjct:   30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
BLAST of CF834241 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.694e-11
Identity = 30/69 (43.48%), Postives = 34/69 (49.28%), Query Frame = -3
Query:  256 GTGYPKPTIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 462
            G G  K T  C   C  RC+ +     C   C  CC +C CVPPG  GN +VC CY N  T  G  KCP
Sbjct:   39 GPGSLKRT-QCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
The following BLAST results are available for this feature:
BLAST of CF834241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SNAK2_SOLTU3.924e-3167.90Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH1.069e-2870.73Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH7.925e-2465.75Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH7.925e-2460.49Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
RSI1_SOLLC1.550e-1143.84Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GAST1_SOLLC2.644e-1145.07Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
SNAK1_SOLTU5.891e-1142.37Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
GASA4_ARATH7.694e-1143.48Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05C21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834241 ID=CF834241; Name=CF834241; organism=Citrus sinensis; type=EST; length=584bp
TTTTTTTTTTTTTTTTAAAAGGAGAAGAAACCTCTTATTATTATCCCCTC
AAAACTTATGTATCCACAAATAAGTAACATGAAATGGATTTATTTATTTA
TTCATAGGAATATGGATCAACTCTGTTTTCCTGGCCACAGGCAACACACA
CGCACACACACATATTTATACATATATAGAGAGAAAGAGAGAATGTAAGC
TCCAAAAAAATTAATTAAGAAAGTAGACGACGTCCTTTCAACTTAAAATA
CTTCAAGGGCACTTGCGTCTGCCATGGTGGGTGGTCATATTGGCGTAGCA
AGGGCAGACCTCAGTGTTGCCTGCAGTGCCTGGAGGAACACAATTGCAAC
GGGCGCAGCAGGTACCACATGCCCTGTGGCACAGGTTTGGCCTCGACGAT
AATCGGCACCTGGCCTGGCATGCACCTCCACAGTCAATTGTTGGTTTTGG
ATAACCAGTTCCTTTGCTTGAGTTAACCGTATGCTCATCAGCTTCAACGA
GATGAAAAACAAGTAGTGAGAGGAGGACTGAAGCAATAAGAGCTTTGGAG
ATGGCCATGGCTTACAAATAGTTATGCTTAGTGT
back to top