CF834343
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834343 vs. ExPASy Swiss-Prot
Match: LSM2_MOUSE (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 3.442e-30 Identity = 65/90 (72.22%), Postives = 74/90 (82.22%), Query Frame = -1 Query: 280 MLFFSYFKDLVGREVPVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVRNCFIRGSVVRDVQLPPDGVDVDLLHDSTRREA 549 MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D KYPHMLSV+NCFIRGSVVR VQLP D VD LL D+ R+EA Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
BLAST of CF834343 vs. ExPASy Swiss-Prot
Match: LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 3.442e-30 Identity = 65/90 (72.22%), Postives = 74/90 (82.22%), Query Frame = -1 Query: 280 MLFFSYFKDLVGREVPVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVRNCFIRGSVVRDVQLPPDGVDVDLLHDSTRREA 549 MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D KYPHMLSV+NCFIRGSVVR VQLP D VD LL D+ R+EA Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
BLAST of CF834343 vs. ExPASy Swiss-Prot
Match: LSM2_DICDI (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 6.076e-27 Identity = 58/91 (63.74%), Postives = 75/91 (82.42%), Query Frame = -1 Query: 277 MLFFSYFKDLVGREVPVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVRNCFIRGSVVRDVQLPPDGVDVDLLHDSTRREAR 549 MLFFS++K LVG+E+ VELKNDL+I G L SVDQ+LNIKL++ +V ++ KYP+M+SV+NCFIRGSVVR V LP + VDV+ L D +R EAR Sbjct: 1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91
BLAST of CF834343 vs. ExPASy Swiss-Prot
Match: LSM2_YEAST (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae GN=LSM2 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.267e-24 Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = -1 Query: 283 MLFFSYFKDLVGREVPVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVRNCFIRGSVVRDVQLPPDGVDVDLLHDSTRRE 549 MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N D+ KYPH+ SVRN FIRGS VR V L + VD +LL D+TRRE Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNKNMVDTNLLQDATRRE 89
BLAST of CF834343 vs. ExPASy Swiss-Prot
Match: LSM2_SCHPO (U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces pombe GN=lsm2 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 9.079e-23 Identity = 54/89 (60.67%), Postives = 67/89 (75.28%), Query Frame = -1 Query: 283 MLFFSYFKDLVGREVPVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVRNCFIRGSVVRDVQLPPDGVDVDLLHDSTRRE 549 MLF+S+FK L+ EV VELKND++IRG L SVDQ+LN+KLEN VVD KYPHM +V++ FIRGSVVR V + VD LL D+ RR+ Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLADACRRD 89
BLAST of CF834343 vs. ExPASy Swiss-Prot
Match: LSM2_ENTBH (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11 Identity = 34/91 (37.36%), Postives = 58/91 (63.74%), Query Frame = -1 Query: 289 MLFFSYFKDLVGREVPVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKY----PHMLSVRNCFIRGSVVRDVQLPPDGVDVDLLHDSTR 549 MLFF YFK + E+ V LKND++I G L +VD +LNIK+EN + ++ + +++ C IRGS ++ V+L +G++ ++ ++TR Sbjct: 1 MLFFEYFKSQLNNEIIVNLKNDISISGILKNVDPFLNIKIENVIAISTNEFIKINKSITNIQLCSIRGSAIKSVELKKNGLEEHMV-EATR 90 The following BLAST results are available for this feature:
BLAST of CF834343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF834343 ID=CF834343; Name=CF834343; organism=Citrus sinensis; type=EST; length=591bpback to top |