CF834343

Overview
NameCF834343
Unique NameCF834343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834343 vs. ExPASy Swiss-Prot
Match: LSM2_MOUSE (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.442e-30
Identity = 65/90 (72.22%), Postives = 74/90 (82.22%), Query Frame = -1
Query:  280 MLFFSYFKDLVGREVPVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVRNCFIRGSVVRDVQLPPDGVDVDLLHDSTRREA 549
            MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D  KYPHMLSV+NCFIRGSVVR VQLP D VD  LL D+ R+EA
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90          
BLAST of CF834343 vs. ExPASy Swiss-Prot
Match: LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.442e-30
Identity = 65/90 (72.22%), Postives = 74/90 (82.22%), Query Frame = -1
Query:  280 MLFFSYFKDLVGREVPVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVRNCFIRGSVVRDVQLPPDGVDVDLLHDSTRREA 549
            MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D  KYPHMLSV+NCFIRGSVVR VQLP D VD  LL D+ R+EA
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90          
BLAST of CF834343 vs. ExPASy Swiss-Prot
Match: LSM2_DICDI (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.076e-27
Identity = 58/91 (63.74%), Postives = 75/91 (82.42%), Query Frame = -1
Query:  277 MLFFSYFKDLVGREVPVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVRNCFIRGSVVRDVQLPPDGVDVDLLHDSTRREAR 549
            MLFFS++K LVG+E+ VELKNDL+I G L SVDQ+LNIKL++ +V ++ KYP+M+SV+NCFIRGSVVR V LP + VDV+ L D +R EAR
Sbjct:    1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91          
BLAST of CF834343 vs. ExPASy Swiss-Prot
Match: LSM2_YEAST (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae GN=LSM2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.267e-24
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = -1
Query:  283 MLFFSYFKDLVGREVPVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVRNCFIRGSVVRDVQLPPDGVDVDLLHDSTRRE 549
            MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+ SVRN FIRGS VR V L  + VD +LL D+TRRE
Sbjct:    1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNKNMVDTNLLQDATRRE 89          
BLAST of CF834343 vs. ExPASy Swiss-Prot
Match: LSM2_SCHPO (U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces pombe GN=lsm2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.079e-23
Identity = 54/89 (60.67%), Postives = 67/89 (75.28%), Query Frame = -1
Query:  283 MLFFSYFKDLVGREVPVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKYPHMLSVRNCFIRGSVVRDVQLPPDGVDVDLLHDSTRRE 549
            MLF+S+FK L+  EV VELKND++IRG L SVDQ+LN+KLEN  VVD  KYPHM +V++ FIRGSVVR V +    VD  LL D+ RR+
Sbjct:    1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLADACRRD 89          
BLAST of CF834343 vs. ExPASy Swiss-Prot
Match: LSM2_ENTBH (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 34/91 (37.36%), Postives = 58/91 (63.74%), Query Frame = -1
Query:  289 MLFFSYFKDLVGREVPVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQVKY----PHMLSVRNCFIRGSVVRDVQLPPDGVDVDLLHDSTR 549
            MLFF YFK  +  E+ V LKND++I G L +VD +LNIK+EN   +   ++      + +++ C IRGS ++ V+L  +G++  ++ ++TR
Sbjct:    1 MLFFEYFKSQLNNEIIVNLKNDISISGILKNVDPFLNIKIENVIAISTNEFIKINKSITNIQLCSIRGSAIKSVELKKNGLEEHMV-EATR 90          
The following BLAST results are available for this feature:
BLAST of CF834343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LSM2_MOUSE3.442e-3072.22U6 snRNA-associated Sm-like protein LSm2 OS=Mus mu... [more]
LSM2_HUMAN3.442e-3072.22U6 snRNA-associated Sm-like protein LSm2 OS=Homo s... [more]
LSM2_DICDI6.076e-2763.74Probable U6 snRNA-associated Sm-like protein LSm2 ... [more]
LSM2_YEAST1.267e-2464.04U6 snRNA-associated Sm-like protein LSm2 OS=Saccha... [more]
LSM2_SCHPO9.079e-2360.67U6 snRNA-associated Sm-like protein LSm2 OS=Schizo... [more]
LSM2_ENTBH7.972e-1137.36Probable U6 snRNA-associated Sm-like protein LSm2 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05G01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834343 ID=CF834343; Name=CF834343; organism=Citrus sinensis; type=EST; length=591bp
TTTTTTTTTTTTTTTTGAAAAAATAAAAAGCGACAACTGCTAATGCCTTT
ATAATTGAATTCAGAAAAATCCCACATAAACAGATTGTTCACACAACCAG
CAACACTTTCCCATTTAATAGGAGGGACTCCATCCACATTAACACAGGGA
ACAGATATACAGCCTTTATACTGTCAATTACGCTTTGTTTAAACAGAAAA
ACAGTTACATCTAAAAGAAGAAAAACCAATGTCTACAAAAGTACATTGAA
GATTTAAACAACTAACTTCAGCCACCCCGAGCTTCTCTTCTTGTGGAATC
ATGAAGCAGGTCGACATCAACACCATCAGGAGGCAGTTGAACATCTCTAA
CCACTGATCCTCTGATGAAACAGTTCCTCACTGAAAGCATGTGAGGGTAC
TTGACTTGATCAACCACTCTCGTATTCTCAAGCTTGATATTGAGGTACTG
ATCAACTGAATGTAAAGTCCCTCTTATTGCCAAATCGTTCTTCAACTCAA
CAGGGACTTCTCTGCCCACCAAATCCTTGAAGTATGAAAAGAACAGCATT
TTTCCTCGCCGTAATGGACAGGGGTCTGCTTCTTTGCTTAC
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