CF834350

Overview
NameCF834350
Unique NameCF834350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig619 contig Csv1_Contig619:918..1388. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834350 vs. ExPASy Swiss-Prot
Match: MAOX_PHAVU (NADP-dependent malic enzyme OS=Phaseolus vulgaris GN=ME1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.618e-25
Identity = 58/81 (71.60%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  227 VRDEMLLAPSEALAAQVTQEHFDKGLIYPPFTNIRXXXXXXXXXXXXXAYDLGLASRLPRPKDLVSYVESCMYSPMYRSYR 469
            VRDEMLLA SEALAAQV++E++DKGLIYPPFTNIR             AYDLGLAS L RPKDLV Y ESCMYSP YRSYR
Sbjct:  509 VRDEMLLAASEALAAQVSEENYDKGLIYPPFTNIRKISANIAAKVAAKAYDLGLASHLKRPKDLVKYAESCMYSPGYRSYR 589          
BLAST of CF834350 vs. ExPASy Swiss-Prot
Match: MAOC_FLAPR (NADP-dependent malic enzyme, chloroplastic OS=Flaveria pringlei GN=MODA PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.584e-25
Identity = 56/81 (69.14%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  227 VRDEMLLAPSEALAAQVTQEHFDKGLIYPPFTNIRXXXXXXXXXXXXXAYDLGLASRLPRPKDLVSYVESCMYSPMYRSYR 469
            V DEMLLA SEALA QVTQEHFD GLIYPPFTNIR             AY+LGLASRLP+P++LV+Y ESCMYSP YR+YR
Sbjct:  567 VHDEMLLAASEALAEQVTQEHFDNGLIYPPFTNIRKISAHIAAKVAAKAYELGLASRLPQPENLVAYAESCMYSPKYRNYR 647          
BLAST of CF834350 vs. ExPASy Swiss-Prot
Match: MAOX_VITVI (NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.642e-24
Identity = 55/81 (67.90%), Postives = 63/81 (77.78%), Query Frame = -3
Query:  227 VRDEMLLAPSEALAAQVTQEHFDKGLIYPPFTNIRXXXXXXXXXXXXXAYDLGLASRLPRPKDLVSYVESCMYSPMYRSYR 469
            V DEMLLA SEALA QVTQE+FDKGLIYPPF+NIR             AY+LGLA+RLP+P++LV Y ESCMYSP+YRSYR
Sbjct:  511 VHDEMLLAASEALARQVTQENFDKGLIYPPFSNIRKISAHIAANVAAKAYELGLATRLPQPENLVKYAESCMYSPVYRSYR 591          
BLAST of CF834350 vs. ExPASy Swiss-Prot
Match: MAOC_FLATR (NADP-dependent malic enzyme, chloroplastic OS=Flaveria trinervia GN=MOD1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.970e-23
Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = -3
Query:  227 VRDEMLLAPSEALAAQVTQEHFDKGLIYPPFTNIRXXXXXXXXXXXXXAYDLGLASRLPRPKDLVSYVESCMYSPMYRSYR 469
            V D+MLLA SEA A QVTQEHFDKGLI+PPFT+IR             AY+LGLASRLP+P++LV+Y ESCMYSP YR YR
Sbjct:  568 VHDDMLLAASEAPAEQVTQEHFDKGLIFPPFTSIRKISAHIAAKVAAKAYELGLASRLPQPENLVAYAESCMYSPKYRIYR 648          
BLAST of CF834350 vs. ExPASy Swiss-Prot
Match: MAOX_MESCR (NADP-dependent malic enzyme OS=Mesembryanthemum crystallinum GN=MOD1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.209e-21
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = -3
Query:  227 VRDEMLLAPSEALAAQVTQEHFDKGLIYPPFTNIRXXXXXXXXXXXXXAYDLGLASRLPRPKDLVSYVESCMYSPMYRSYR 469
            V D+MLLA SEALA+QVT EHF KGLIYPPF +IR             AY+LGLASRLP+P DLV + ESCMY+P YRS+R
Sbjct:  505 VHDDMLLAASEALASQVTGEHFIKGLIYPPFKDIRKISAHIAAGVAAKAYELGLASRLPQPADLVKFAESCMYNPTYRSFR 585          
BLAST of CF834350 vs. ExPASy Swiss-Prot
Match: MAOC_ORYSJ (NADP-dependent malic enzyme, chloroplastic OS=Oryza sativa subsp. japonica GN=ME6 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 8.396e-21
Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = -3
Query:  227 VRDEMLLAPSEALAAQVTQEHFDKGLIYPPFTNIRXXXXXXXXXXXXXAYDLGLASRLPRPKDLVSYVESCMYSPMYRSYR 469
            V ++MLLA SE LA Q TQE+F+KG I+PPFTNIR             AY+LGLA+RLP+P+DL  Y ESCMY+P+YRSYR
Sbjct:  559 VHEDMLLAASETLADQATQENFEKGSIFPPFTNIRKISARIAASVAAKAYELGLATRLPQPRDLEKYAESCMYTPVYRSYR 639          
BLAST of CF834350 vs. ExPASy Swiss-Prot
Match: MAOC_SOLLC (NADP-dependent malic enzyme, chloroplastic (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.701e-19
Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = -3
Query:  227 VRDEMLLAPSEALAAQVTQEHFDKGLIYPPFTNIRXXXXXXXXXXXXXAYDLGLASRLPRPKDLVSYVESCMYSPMYRSYR 469
            V D+MLL  SEALA +V+QE+F+KG   PPF+NIR              Y+LGLA+RLP+PKDLV+Y ESCMYSP YRSYR
Sbjct:  494 VHDDMLLVASEALADEVSQENFEKGTHIPPFSNIRKISAHIAKVAAKA-YELGLATRLPQPKDLVAYAESCMYSPAYRSYR 573          
BLAST of CF834350 vs. ExPASy Swiss-Prot
Match: MAOC_MAIZE (NADP-dependent malic enzyme, chloroplastic OS=Zea mays GN=MOD1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.701e-19
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = -3
Query:  227 VRDEMLLAPSEALAAQVTQEHFDKGLIYPPFTNIRXXXXXXXXXXXXXAYDLGLASRLPRPKDLVSYVESCMYSPMYRSYR 469
            V ++MLLA S+ALA Q TQ++F+KG I+PPFT+IR             AY+LGLA+RLP P DLV Y E+CMY+P+YR+YR
Sbjct:  556 VHEDMLLAASKALADQATQDNFEKGSIFPPFTSIRKISAHIAAAVAGKAYELGLATRLPPPSDLVKYAENCMYTPVYRNYR 636          
BLAST of CF834350 vs. ExPASy Swiss-Prot
Match: MAOX_POPTR (NADP-dependent malic enzyme OS=Populus trichocarpa PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 3.527e-19
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = -3
Query:  227 VRDEMLLAPSEALAAQVTQEHFDKGLIYPPFTNIRXXXXXXXXXXXXXAYDLGLASRLPRPKDLVSYVESCMYSPMYRSYR 469
            V D+MLLA +EALA Q+ +E+  KGLIYPP +NIR             AY+LGLA+RLPRP++LV + ESCMYSP YR YR
Sbjct:  511 VHDDMLLAAAEALAGQIKEEYLAKGLIYPPLSNIRKISVQIAANVAAKAYELGLATRLPRPENLVKHAESCMYSPAYRYYR 591          
The following BLAST results are available for this feature:
BLAST of CF834350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MAOX_PHAVU5.618e-2571.60NADP-dependent malic enzyme OS=Phaseolus vulgaris ... [more]
MAOC_FLAPR9.584e-2569.14NADP-dependent malic enzyme, chloroplastic OS=Flav... [more]
MAOX_VITVI3.642e-2467.90NADP-dependent malic enzyme OS=Vitis vinifera PE=2... [more]
MAOC_FLATR8.970e-2365.43NADP-dependent malic enzyme, chloroplastic OS=Flav... [more]
MAOX_MESCR2.209e-2162.96NADP-dependent malic enzyme OS=Mesembryanthemum cr... [more]
MAOC_ORYSJ8.396e-2159.26NADP-dependent malic enzyme, chloroplastic OS=Oryz... [more]
MAOC_SOLLC2.701e-1959.26NADP-dependent malic enzyme, chloroplastic (Fragme... [more]
MAOC_MAIZE2.701e-1955.56NADP-dependent malic enzyme, chloroplastic OS=Zea ... [more]
MAOX_POPTR3.527e-1956.79NADP-dependent malic enzyme OS=Populus trichocarpa... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05G05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834350 ID=CF834350; Name=CF834350; organism=Citrus sinensis; type=EST; length=471bp
TGGGATCATTTTCAATCAATAAAGGACCCCTAAGAAAAAGGAGGTTCCTG
ATAGCAATGCTAAGAACCTCTACATGATTAAAACAAACCAAAATAGAAAA
CTAAATTTAAACTGATAAACAGGCGACAAAGAAATATTAAAAAGAACGAA
AATTAATATAACTAGGTTCGCAGCAGATTGCAGAATGCAGACTATAATCG
CACACTTCCACATGGAGTTCAGTTCAACGGTAGCTTCGGTACATTGGGCT
GTACATGCAGCTCTCAACGTAACTCACTAAATCCTTAGGACGAGGAAGAC
GGGAAGCCAGACCAAGGTCATATGCCTTGGCAGCAACTTTAGCAGCAATG
TGGGCAGAGATCTTTCTGATATTAGTGAATGGTGGGTATATCAATCCCTT
ATCGAAGTGCTCTTGTGTCACTTGCGCTGCCAAAGCTTCCGAGGGTGCTA
GAAGCATCTCATCGCGGACAC
back to top