CF834354

Overview
NameCF834354
Unique NameCF834354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834354 vs. ExPASy Swiss-Prot
Match: SKI11_ARATH (F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 8.283e-47
Identity = 94/172 (54.65%), Postives = 118/172 (68.60%), Query Frame = 2
Query:   20 SPRXLFGSGSLPSIAIIAGGSDNNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGM-SSPTVSLTCGEEFDLETRKWRKIEGMYP--------NVNRAAQAPPLVAVVDNQLYALEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNEL 508
            SPR LFGS SL  IAI AGG D+ G +L  AE+Y+S    W  LP M+ PR++CSG FMDGKFYVIGG+  + +  LTCGEE+DLET+KW +I  + P        +++ AA+APPLVAVV+NQLYA ++    V+KYDK    W  +GRLP RA   NGWGLAF+ACG  L
Sbjct:  247 SPRCLFGSASLGEIAIFAGGCDSQGKILDFAEMYNSELQTWITLPRMNKPRKMCSGVFMDGKFYVIGGIGGADSKGLTCGEEYDLETKKWTQIPDLSPPRSRADQADMSPAAEAPPLVAVVNNQLYAADHADMEVRKYDKENKKWLTVGRLPERAGSVNGWGLAFRACGERL 418          
BLAST of CF834354 vs. ExPASy Swiss-Prot
Match: FBK15_ARATH (F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana GN=At1g26930 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.946e-44
Identity = 90/174 (51.72%), Postives = 119/174 (68.39%), Query Frame = 2
Query:   23 PRXLFGSGSLPSIAIIAGGSDNNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGM-----SSPTVSLTCGEEFDLETRKWRKIEGMYP-------NVNRAAQAPPLVAVVDNQLYALEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNEL 508
            PR LFGS S   IA++AGG D++G +L +AELY+     W +LP M+  R++CSG FMDGKFYVIGG+     + P V LTCGEEFDL+TRKW +I  M P        ++ AA APPLVAVV++QLYA ++    V++YDK K  W+ +G LP +A   NGWGLAF+ACG+ +
Sbjct:  201 PRCLFGSASYGEIAVLAGGCDSSGRILDTAELYNYEDQTWLVLPGMNKRRKMCSGVFMDGKFYVIGGIGVGEENEPKV-LTCGEEFDLKTRKWTEIPEMSPPRSNQGNGMSAAAMAPPLVAVVNDQLYAADHAGMAVRRYDKEKRVWNKVGNLPEQAGSMNGWGLAFRACGDRI 373          
BLAST of CF834354 vs. ExPASy Swiss-Prot
Match: FBK29_ARATH (F-box/kelch-repeat protein At1g74510 OS=Arabidopsis thaliana GN=At1g74510 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.556e-43
Identity = 87/178 (48.88%), Postives = 110/178 (61.80%), Query Frame = 2
Query:   23 PRXLFGSGSLPSIAIIAGGSDNNGHVLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGM-SSPTVSLTCGEEFDLETRKWRKIEGMYPN---------------VNRAAQAPPLVAVVDNQLYALEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNEL 508
            PR LFGS SL  IA+IAGG D  G +L SAELY+S TG W ++PSM+  R++CS  FMDG FY IGG+    +  L CGE +DL+ + W  I  M P                   A++APPLVAVV ++LYA  Y    VKKYDK  N W+ +G LP RA   NGWG+AF+ACG++L
Sbjct:  225 PRCLFGSASLGEIAVIAGGCDPRGRILSSAELYNSETGEWTVIPSMNKARKMCSSVFMDGNFYCIGGIGEGNSKMLLCGEVYDLKKKTWTLIPNMLPERSSGGGGDQAKEIAAATAASEAPPLVAVVKDELYAANYAQQEVKKYDKRLNVWNKVGNLPERASSMNGWGMAFRACGDQL 402          
BLAST of CF834354 vs. ExPASy Swiss-Prot
Match: FBK70_ARATH (F-box/kelch-repeat protein At3g27150 OS=Arabidopsis thaliana GN=At3g27150 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.050e-33
Identity = 72/174 (41.38%), Postives = 106/174 (60.92%), Query Frame = 2
Query:    2 KSEAI*SPRXLFGSGSLPSIAIIAGGSDNNGH----VLKSAELYDSTTGRWEMLPSMHSPRRLCSGFFMDGKFYVIGGMSSPTVSLTCGEEFDLETRKWRKIEGMYPNVN-RAAQAPPLVAVVDNQLYALEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNEL 508
            K  A+ +PR LF S +  ++  +AGG    G+    V+ S E YDS T  W +L  MH  R+ CSG ++ GKFYV+GG      +LTCGE +D +T  W  I  +  +++  + Q+PPL+AVV + LY+LE   N ++ YD   N+W  LG +PVRA  + GWG+AFK+ G++L
Sbjct:  194 KGPAMITPRILFASATCGTVVFVAGGLKIEGNGTMEVVDSVEKYDSKTKTWTLLRGMHKRRKFCSGCYLRGKFYVLGGRDENGQNLTCGESYDEKTNTWELIPDILKDMSFSSVQSPPLIAVVGDDLYSLETSANELRVYDANANSWKKLGDVPVRAKSNGGWGVAFKSLGDKL 367          
The following BLAST results are available for this feature:
BLAST of CF834354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SKI11_ARATH8.283e-4754.65F-box/kelch-repeat protein SKIP11 OS=Arabidopsis t... [more]
FBK15_ARATH2.946e-4451.72F-box/kelch-repeat protein At1g26930 OS=Arabidopsi... [more]
FBK29_ARATH5.556e-4348.88F-box/kelch-repeat protein At1g74510 OS=Arabidopsi... [more]
FBK70_ARATH1.050e-3341.38F-box/kelch-repeat protein At3g27150 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05G07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834354 ID=CF834354; Name=CF834354; organism=Citrus sinensis; type=EST; length=509bp
GAAGAGTGAGGCCATATAAAGCCCTCGTTGNTTGTTTGGCTCTGGTAGTC
TCCCTTCTATAGCTATTATTGCAGGTGGCAGTGACAACAACGGGCATGTT
TTAAAATCTGCTGAATTATATGACTCCACAACGGGCAGATGGGAAATGTT
ACCCAGCATGCATTCTCCCCGTAGATTGTGTTCTGGCTTTTTCATGGATG
GAAAATTCTATGTGATTGGTGGAATGTCAAGTCCCACTGTTTCATTGACC
TGTGGGGAGGAGTTTGATCTTGAGACGAGGAAATGGAGGAAGATAGAAGG
GATGTACCCAAATGTCAATAGGGCTGCACAGGCTCCTCCTCTTGTTGCAG
TTGTGGATAATCAGTTATATGCACTTGAGTACTTGACTAACATGGTCAAG
AAGTATGACAAGTTGAAGAACACATGGGATGTGTTGGGAAGGCTTCCAGT
TAGAGCTGATCTCTCAAATGGCTGGGGTCTGGCCTTTAAAGCTTGTGGAA
ATGAACTTC
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