CF834358

Overview
NameCF834358
Unique NameCF834358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_RHOP2 (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.891e-36
Identity = 77/127 (60.63%), Postives = 92/127 (72.44%), Query Frame = -2 
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVWI+PG GK IVN +E +VYF     R  +  P       G +DV CTV GGG+SGQ GAVR GIS+AL N+EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   32 GRAYATGKRKDAVARVWIKPGAGKVIVNSREVEVYFARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158
[Close]
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_BART1 (30S ribosomal protein S9 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpsI PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.535e-35
Identity = 76/127 (59.84%), Postives = 92/127 (72.44%), Query Frame = -2 
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVWI+PG GK I+N+KEFD YF     R  L  P   T     +D+  TV GGG+SGQ GA+R GIS+AL  +EP+LRP L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   35 GRAYATGKRKDAVARVWIKPGSGKIIINNKEFDKYFARPVLRMILRQPIVATNRDTQFDIVATVAGGGLSGQAGAIRHGISKALTYYEPELRPILKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 161
[Close]
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_NITHX (30S ribosomal protein S9 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpsI PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.619e-35
Identity = 75/127 (59.06%), Postives = 92/127 (72.44%), Query Frame = -2 
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVWI+PG GK +VN +E +VYF     R  +  P       G +DV CTV GGG+SGQ GAVR G+S+AL N+EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   32 GRAYATGKRKDAVARVWIKPGAGKILVNAREVEVYFARPVLRMMIQQPLVAAARAGQYDVVCTVAGGGLSGQAGAVRHGLSKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158
[Close]
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_NITWN (30S ribosomal protein S9 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsI PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.420e-35
Identity = 75/127 (59.06%), Postives = 92/127 (72.44%), Query Frame = -2 
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVWI+PG GK +VN +E DVYF     R  +  P       G +DV CTV GGG+SGQ GAVR G+S+AL ++EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   32 GRAYATGKRKDAVARVWIKPGAGKILVNAREVDVYFARPVLRMMIQQPLVAAARAGQYDVVCTVAGGGLSGQAGAVRHGLSKALTHFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158
[Close]
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_RHOPT (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.467e-35
Identity = 75/127 (59.06%), Postives = 90/127 (70.87%), Query Frame = -2 
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVWI+PG GK  VN +E + YF     R  +  P       G +DV CTV GGG+SGQ GAVR GIS+AL N+EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   34 GRAYATGKRKDAVARVWIKPGAGKITVNSREVETYFARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRSVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 160
[Close]
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_RHOPS (30S ribosomal protein S9 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsI PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.467e-35
Identity = 76/127 (59.84%), Postives = 91/127 (71.65%), Query Frame = -2 
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVWI+PG GK  VN +E +VYF     R  +  P       G +DV CTV GGG+SGQ GAVR GIS+AL N+EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   32 GRAYATGKRKDAVARVWIKPGAGKVTVNAREVEVYFARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158
[Close]
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_RHOPA (30S ribosomal protein S9 OS=Rhodopseudomonas palustris GN=rpsI PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.467e-35
Identity = 75/127 (59.06%), Postives = 90/127 (70.87%), Query Frame = -2 
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVWI+PG GK  VN +E + YF     R  +  P       G +DV CTV GGG+SGQ GAVR GIS+AL N+EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   34 GRAYATGKRKDAVARVWIKPGAGKITVNSREVETYFARPVLRMMIQQPLVAAARAGQYDVICTVAGGGLSGQAGAVRHGISKALTNFEPELRSVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 160
[Close]
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_AZOC5 (30S ribosomal protein S9 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpsI PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.834e-35
Identity = 75/127 (59.06%), Postives = 92/127 (72.44%), Query Frame = -2 
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVW++PG GK IVND+  +VYF     R  +  PF      G +DV CTV GGG+SGQ GA+R GISRAL  +EP+LR  L+  GFLTRDSRVVERKK G+AKAR+SFQ+ KR
Sbjct:   28 GRAYATGKRKDAVARVWVRPGTGKIIVNDRPVEVYFARPVLRLIINQPFAAAAREGAYDVVCTVSGGGLSGQAGALRHGISRALTFYEPELRGPLKKGGFLTRDSRVVERKKYGRAKARRSFQFSKR 154
[Close]
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_BRASO (30S ribosomal protein S9 OS=Bradyrhizobium sp. (strain ORS278) GN=rpsI PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.951e-35
Identity = 74/127 (58.27%), Postives = 91/127 (71.65%), Query Frame = -2 
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVWI+PG GK  VN ++ +VYF     R  +  P       G +DV CTV GGG+SGQ GAVR G+S+AL N+EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   34 GRAYATGKRKDAVARVWIKPGSGKVTVNTRDIEVYFARPVLRMMIEQPMVVAARKGQYDVICTVAGGGLSGQAGAVRHGLSKALTNFEPELRSVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 160
[Close]
BLAST of CF834358 vs. ExPASy Swiss-Prot
Match: RS9_BRASB (30S ribosomal protein S9 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rpsI PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.951e-35
Identity = 74/127 (58.27%), Postives = 91/127 (71.65%), Query Frame = -2 
Query:  287 GRVYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDHRGALLGPFFETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 667
            GR Y TG+RK ++ARVWI+PG GK  VN ++ +VYF     R  +  P       G +DV CTV GGG+SGQ GAVR G+S+AL N+EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   34 GRAYATGKRKDAVARVWIKPGSGKVTVNTRDIEVYFARPVLRMMIQQPLVAAARNGQYDVICTVAGGGLSGQAGAVRHGLSKALTNFEPELRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 160
The following BLAST results are available for this feature:
BLAST of CF834358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_RHOP26.891e-3660.6330S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]
RS9_BART11.535e-3559.8430S ribosomal protein S9 OS=Bartonella tribocorum ... [more]
RS9_NITHX2.619e-3559.0630S ribosomal protein S9 OS=Nitrobacter hamburgens... [more]
RS9_NITWN3.420e-3559.0630S ribosomal protein S9 OS=Nitrobacter winogradsk... [more]
RS9_RHOPT4.467e-3559.0630S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]
RS9_RHOPS4.467e-3559.8430S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]
RS9_RHOPA4.467e-3559.0630S ribosomal protein S9 OS=Rhodopseudomonas palus... [more]
RS9_AZOC55.834e-3559.0630S ribosomal protein S9 OS=Azorhizobium caulinoda... [more]
RS9_BRASO9.951e-3558.2730S ribosomal protein S9 OS=Bradyrhizobium sp. (st... [more]
RS9_BRASB9.951e-3558.2730S ribosomal protein S9 OS=Bradyrhizobium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05G09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834358 ID=CF834358; Name=CF834358; organism=Citrus sinensis; type=EST; length=668bp
TTTTTTTTTTTCCTTTTGGGCTCACAAATGCTCCTCTCTTGTATTTGCAC
CCCCATATGACATAAGGGTACAAACTACAAACAGTTTTGTTTAACAAATA
AACTGCTCAAAAATCTTCACAGCTTTTCCATGACCGTGTGCGTACAGAAA
GCAAGAAGCAGGGCGTGTTGAATGGACATGCCCAGCCGGTTGGATACTCT
TAAGACTCGACAAGTTATTGCAATGAGGCAAAACTGAACTTCCATAGAAC
GTGGGCCATTGAAATGGAAGCCCCAATTGTCGATTAACGCTTAACCCATT
GGAAGCTCTTTCTCGCTTTTGCCTTCCCTGGTTTTTTCCTTTCAACCACA
CGTGAATCTCTCGTCAAGAAACCAGCGGATCTGAGTGCAGGACGTAGATC
TGGTTCCCAATTTTGCAATGCCCTGCTGATCCCTAGCCTAACAGCTCCAA
CTTGACCTGAAACGCCACCCCCTTTGACAGTACAATCGACATCCCAAAGG
CCCAAGGTCTTTGTCTCAAAGAAAGGTCCAAGAAGTGCACCACGATGATC
AAGCATTGGGAAATAAACGTCAAATTCTTTATCATTAACAATGAATTTTC
CATCACCAGGCTGAATCCAAACACGAGCTATACTGCATTTCCTTCTCCCT
GTTCCATAAACCCTTCCT
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