CF834368

Overview
NameCF834368
Unique NameCF834368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:960..1544. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.479e-35
Identity = 66/104 (63.46%), Postives = 85/104 (81.73%), Query Frame = 2
Query:   56 LCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            LCM+V+ P+ AQAITCGQVS +LAPCI +++ GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +N NNAA LPG CGV+IPY+IS ST+C+ V+
Sbjct:   15 LCMVVSVPI-AQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.850e-35
Identity = 64/104 (61.54%), Postives = 85/104 (81.73%), Query Frame = 2
Query:   56 LCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            LCM+V+ P+ AQA+TCGQVS +LAPCI +++ GG +P  CCNG+R++N  A+TT DRQTACNCLKQ + S+P +N NNAA LPG CGV++PYKIS ST+C+ V+
Sbjct:   15 LCMVVSVPI-AQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.850e-35
Identity = 68/104 (65.38%), Postives = 83/104 (79.81%), Query Frame = 2
Query:   56 LCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            LCM V+    A AITCGQV+ SLAPCIG+++SGG +P  CCNG+R++N  ARTT DRQTACNCLK  A SI  +N NNAAGLPG CGV++PYKISTST+C+ V+
Sbjct:   15 LCMAVS---VAHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.448e-34
Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            V CM+V  P + +A++CGQVS SLAPCI +L  GG +P  CC+GV+SLN+AA+TTPDRQ AC CLK A  SI  +N  NAA  PG CGVSIPYKIS STDCSKV+
Sbjct:   13 VTCMVVGAPYT-EALSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.882e-33
Identity = 66/91 (72.53%), Postives = 73/91 (80.22%), Query Frame = 2
Query:   95 ITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            ITCGQVS SLAPCI +L++GG +P  CCNGVRSLN AA+TT DRQ ACNCLK A  SI  LNLN AAGLPG CGVS+PYKIS STDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.081e-32
Identity = 61/91 (67.03%), Postives = 75/91 (82.42%), Query Frame = 2
Query:   95 ITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            ITCGQVS SLAPCIG+++ GG +P  CCNG+R++N  ARTTPDR+TACNCLKQ + SI  +N NNAA LPG CGV+IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.635e-32
Identity = 64/104 (61.54%), Postives = 78/104 (75.00%), Query Frame = 2
Query:   59 CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            CM+V GP+++ A ++CG VSG +APCIG+L   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P+LN   AAGLP ACGV+IPYKIS ST+C+ VR
Sbjct:   14 CMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.054e-32
Identity = 66/106 (62.26%), Postives = 81/106 (76.42%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            V+CM+V  P++  AI+CG V+  L+PC+ +L +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AA SI  LN NNAA LPG CGV+IPYKISTST+C+ V+
Sbjct:    5 VMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.907e-32
Identity = 66/106 (62.26%), Postives = 80/106 (75.47%), Query Frame = 2
Query:   53 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLKSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            V+CM+V  P++  AI+CG V+  L+PC+ +L +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AA SI  LN NNAA LPG CGV IPYKISTST+C+ V+
Sbjct:   13 VMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CF834368 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.033e-31
Identity = 64/104 (61.54%), Postives = 77/104 (74.04%), Query Frame = 2
Query:   59 CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLKSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 367
            CM+V GP++  A ++CG VSG+LA CIG+L   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P+LN   AAGLP ACGV+IPYKIS ST+C+ VR
Sbjct:   14 CMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
The following BLAST results are available for this feature:
BLAST of CF834368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP1_PRUDU4.479e-3563.46Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV5.850e-3561.54Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_MALDO5.850e-3565.38Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_HELAN8.448e-3463.81Non-specific lipid-transfer protein OS=Helianthus ... [more]
LTP1_MORNI1.882e-3372.53Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUAR2.081e-3267.03Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP2_BRANA4.635e-3261.54Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP4_LENCU6.054e-3262.26Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU7.907e-3262.26Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTPB_BRAOT1.033e-3161.54Non-specific lipid-transfer protein B OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05G15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05G15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834368 ID=CF834368; Name=CF834368; organism=Citrus sinensis; type=EST; length=585bp
GCCGTTAAGGAGAAATGTGAAATGGNTGCCCTCAAGCTTGTTCCCTTTTT
AGGTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACA
TGTGGGCAGGTGAGTGGCTCATTGGCACCATGCATCGGTTTCTTGAAATC
GGGCGGCCCTATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAACG
CTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAG
CAAGCCGCCAGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTCT
TCCAGGAGCTTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACTG
ACTGCTCTAAGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGCT
TAAGTTGACGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGTC
CGATTTATGAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGCC
CTCGTTTCATGTTATGTTTTATTGTCTTTGCTTTTCATGTCATCGTCAGT
TTGTGTCTATTCTGATTATTAAATGAAATCTTGCC
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