CF834383

Overview
NameCF834383
Unique NameCF834383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8932 contig Csv1_Contig8932:68..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834383 vs. ExPASy Swiss-Prot
Match: ZB14_MAIZE (14 kDa zinc-binding protein OS=Zea mays GN=ZBP14 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 8.667e-56
Identity = 106/129 (82.17%), Postives = 117/129 (90.70%), Query Frame = -1
Query:  173 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIFGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 559
            M+SE EAA+  +  DSPTIFDKII KEIPS VVYED+KVLAFRDI+PQAPTHILIIPKVKDGLTGL+KAEERH EI G LLY AK+VAKQEGLEDG+R+VINDGP+G QSV+HIHVHLLGGRQMNWPPG
Sbjct:    1 MSSEKEAALRRL-DDSPTIFDKIIKKEIPSTVVYEDEKVLAFRDINPQAPTHILIIPKVKDGLTGLAKAEERHIEILGYLLYVAKVVAKQEGLEDGYRVVINDGPSGCQSVYHIHVHLLGGRQMNWPPG 128          
BLAST of CF834383 vs. ExPASy Swiss-Prot
Match: ZB14_BRAJU (14 kDa zinc-binding protein (Fragment) OS=Brassica juncea PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.190e-50
Identity = 94/112 (83.93%), Postives = 102/112 (91.07%), Query Frame = -1
Query:  173 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIFGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 508
            TIF KII+KEIPS VVYEDDKVLAFRDI PQ P HIL+IPKV+DGLTGL KAEERH +I GRLLYTAKLVAKQEGL++GFRIVINDGP G QSV+HIHVHL+GGRQMNWPPG
Sbjct:    2 TIFGKIISKEIPSTVVYEDDKVLAFRDITPQGPVHILLIPKVRDGLTGLFKAEERHIDILGRLLYTAKLVAKQEGLDEGFRIVINDGPQGCQSVYHIHVHLIGGRQMNWPPG 113          
BLAST of CF834383 vs. ExPASy Swiss-Prot
Match: HINT1_BOVIN (Histidine triad nucleotide-binding protein 1 OS=Bos taurus GN=HINT1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 7.894e-33
Identity = 69/129 (53.49%), Postives = 90/129 (69.77%), Query Frame = -1
Query:  173 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIFGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 559
            MA E   A  A P    TIF KII KEIP+K++YEDD+ LAF DI PQAPTH L+IPK    ++ +S AE+    + G L+   K  A   GL+ G+R+V+N+G +GGQSV+H+H+H+LGGRQMNWPPG
Sbjct:    1 MADEIAKAQVARPGGD-TIFGKIIRKEIPAKIIYEDDQCLAFHDISPQAPTHFLVIPKKY--ISQISAAEDDDESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126          
BLAST of CF834383 vs. ExPASy Swiss-Prot
Match: Y1390_SYNE7 (Uncharacterized HIT-like protein Synpcc7942_1390 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_1390 PE=4 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 65/112 (58.04%), Postives = 81/112 (72.32%), Query Frame = -1
Query:  173 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIFGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 508
            TIF KII +EIP+ +VYEDD  LAFRD+ PQAP HIL+IPK    +  L +A   H  + G LL T K +A QEGL +G+R VIN GP GGQ+V+H+H+HLLGGR + WPPG
Sbjct:    5 TIFGKIIRREIPADIVYEDDLCLAFRDVAPQAPVHILVIPK--QPIANLLEATAEHQALLGHLLLTVKAIAAQEGLTEGYRTVINTGPAGGQTVYHLHIHLLGGRSLAWPPG 114          
BLAST of CF834383 vs. ExPASy Swiss-Prot
Match: HINT1_RABIT (Histidine triad nucleotide-binding protein 1 OS=Oryctolagus cuniculus GN=HINT1 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.346e-32
Identity = 68/129 (52.71%), Postives = 90/129 (69.77%), Query Frame = -1
Query:  173 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIFGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 559
            MA E   A  A P    TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK    ++ +S AE+    + G L+   K  A   GL+ G+R+V+N+G +GGQSV+H+H+H+LGGRQMNWPPG
Sbjct:    1 MADEIAKAQVARPGGD-TIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKH--ISQISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126          
BLAST of CF834383 vs. ExPASy Swiss-Prot
Match: HINT_CAEEL (Histidine triad nucleotide-binding protein 1 OS=Caenorhabditis elegans GN=hint-1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.297e-32
Identity = 64/132 (48.48%), Postives = 95/132 (71.97%), Query Frame = -1
Query:  173 MASENEAAVAAVPSD---SPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIFGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 559
            M+  ++A +AA+  D   + T+F KII KEIP+K+++EDD+ LAF D+ PQAP H L+IPK +  +  L  A +    + G+L+ TA  VAKQ G+ +G+R+V+N+G +G QSVFH+H+H+LGGRQ+ WPPG
Sbjct:    1 MSEVDKAHLAAINKDVQANDTLFGKIIRKEIPAKIIFEDDEALAFHDVSPQAPIHFLVIPKRRIDM--LENAVDSDAALIGKLMVTASKVAKQLGMANGYRVVVNNGKDGAQSVFHLHLHVLGGRQLQWPPG 130          
BLAST of CF834383 vs. ExPASy Swiss-Prot
Match: HINT2_BOVIN (Histidine triad nucleotide-binding protein 2, mitochondrial OS=Bos taurus GN=HINT2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.297e-32
Identity = 64/124 (51.61%), Postives = 89/124 (71.77%), Query Frame = -1
Query:  173 EAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIFGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 544
            +A  AA    +PTIF +I+++ +P+ ++YED + LAFRD+ PQAP H L+IPK    +  +S+AEE   ++ G LL  AK  AK EGL DG+R+VINDG  G QSV+H+H+H+LGGRQ+ WPPG
Sbjct:   42 KAQQAAPGGAAPTIFSRILDRSLPADILYEDQQCLAFRDVAPQAPVHFLVIPKKP--IPRISQAEEEDQQLLGHLLLVAKETAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVLGGRQLQWPPG 163          
BLAST of CF834383 vs. ExPASy Swiss-Prot
Match: HINT1_RAT (Histidine triad nucleotide-binding protein 1 OS=Rattus norvegicus GN=Hint1 PE=1 SV=5)

HSP 1 Score: 138.272 bits (347), Expect = 3.000e-32
Identity = 68/129 (52.71%), Postives = 90/129 (69.77%), Query Frame = -1
Query:  173 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIFGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 559
            MA E   A  A P    TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK    ++ +S A++    + G L+   K  A   GL+ G+R+V+N+G +GGQSV+HIH+H+LGGRQMNWPPG
Sbjct:    1 MADEIAKAQVAQPGGD-TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVADDDDESLLGHLMIVGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLHVLGGRQMNWPPG 126          
BLAST of CF834383 vs. ExPASy Swiss-Prot
Match: HINT1_MOUSE (Histidine triad nucleotide-binding protein 1 OS=Mus musculus GN=Hint1 PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 3.000e-32
Identity = 68/129 (52.71%), Postives = 90/129 (69.77%), Query Frame = -1
Query:  173 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIFGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 559
            MA E   A  A P    TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK    ++ +S A++    + G L+   K  A   GL+ G+R+V+N+G +GGQSV+HIH+H+LGGRQMNWPPG
Sbjct:    1 MADEIAKAQVAQPGGD-TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH--ISQISVADDDDESLLGHLMIVGKKCAADLGLKRGYRMVVNEGADGGQSVYHIHLHVLGGRQMNWPPG 126          
BLAST of CF834383 vs. ExPASy Swiss-Prot
Match: HINT2_HUMAN (Histidine triad nucleotide-binding protein 2, mitochondrial OS=Homo sapiens GN=HINT2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.918e-32
Identity = 67/128 (52.34%), Postives = 90/128 (70.31%), Query Frame = -1
Query:  173 NEAAVA--AVPSDS-PTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIFGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGGRQMNWPPG 547
            NE A A  A P  + PTIF +I++K +P+ ++YED + L FRD+ PQAP H L+IPK    +  +S+AEE   ++ G LL  AK  AK EGL DG+R+VINDG  G QSV+H+H+H+LGGRQ+ WPPG
Sbjct:   38 NEVAKAQQATPGGAAPTIFSRILDKSLPADILYEDQQCLVFRDVAPQAPVHFLVIPKKP--IPRISQAEEEDQQLLGHLLLVAKQTAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVLGGRQLQWPPG 163          
The following BLAST results are available for this feature:
BLAST of CF834383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ZB14_MAIZE8.667e-5682.1714 kDa zinc-binding protein OS=Zea mays GN=ZBP14 P... [more]
ZB14_BRAJU3.190e-5083.9314 kDa zinc-binding protein (Fragment) OS=Brassica... [more]
HINT1_BOVIN7.894e-3353.49Histidine triad nucleotide-binding protein 1 OS=Bo... [more]
Y1390_SYNE71.031e-3258.04Uncharacterized HIT-like protein Synpcc7942_1390 O... [more]
HINT1_RABIT1.346e-3252.71Histidine triad nucleotide-binding protein 1 OS=Or... [more]
HINT_CAEEL2.297e-3248.48Histidine triad nucleotide-binding protein 1 OS=Ca... [more]
HINT2_BOVIN2.297e-3251.61Histidine triad nucleotide-binding protein 2, mito... [more]
HINT1_RAT3.000e-3252.71Histidine triad nucleotide-binding protein 1 OS=Ra... [more]
HINT1_MOUSE3.000e-3252.71Histidine triad nucleotide-binding protein 1 OS=Mu... [more]
HINT2_HUMAN3.918e-3252.34Histidine triad nucleotide-binding protein 2, mito... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05H03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834383 ID=CF834383; Name=CF834383; organism=Citrus sinensis; type=EST; length=613bp
CTTTTAAACCTTTCAGCACAATGTCATTTCACATCATATCACCTAATGTG
GCTCAAAGCAGCCACCAATTAGTTTGTTATTTGAAGCTCGATGCAGCTTG
ATGCATATTAAAGTACAAAGGGCATAATCATTTTTTCATAAGAGAATCTG
GCACCCAAAATACTTCATCTTAGCCCGGGGGCCAGTTCATTTGTCGTCCT
CCTAGGAGGTGGACGTGGATGTGAAAAACTGATTGACCTCCATTTGGCCC
ATCATTAATCACAATCCTAAAGCCGTCTTCTAGTCCTTCCTGTTTAGCAA
CAAGCTTAGCAGTGTAAAGAAGGCGGCCAAAAATTTCGCAATGCCTTTCC
TCGGCCTTTGAAAGTCCAGTCAAGCCATCCTTCACTTTGGGAATAATTAG
AATGTGTGTAGGAGCTTGGGGATCTATGTCCCTAAAGGCTAAGACCTTAT
CATCCTCATAAACAACTTTAGATGGGATTTCTTTGTTAATTATTTTGTCA
AATATGGTAGGCGAATCAGAAGGAACGGCTGCAACAGCAGCCTCGTTCTC
TGAAGCCATGACGACGGCAGACAAATGAGACGTCAGCACTGCAAGTCGGC
TGCTTGTGCTTGA
back to top