CF834386

Overview
NameCF834386
Unique NameCF834386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig772 contig Csv1_Contig772:17..577. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834386 vs. ExPASy Swiss-Prot
Match: COX12_SCHPO (Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe GN=cox12 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 30/63 (47.62%), Postives = 37/63 (58.73%), Query Frame = 2 
Query:  371 DQEASEETPQIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVPAKGEGAPQCDKFAKYYRALC 559
            +QE  E   Q    T   D RFP TNQT+HCF  YI+Y RC+ AKGE    C +F   Y++LC
Sbjct:    3 EQEDQEAPKQFTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLC 65
The following BLAST results are available for this feature:
BLAST of CF834386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COX12_SCHPO9.239e-1147.62Cytochrome c oxidase subunit 6B OS=Schizosaccharom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05H04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834386 ID=CF834386; Name=CF834386; organism=Citrus sinensis; type=EST; length=561bp
GTGAACAAACCCCATTTGAAGAAAGTAGATNGCTTTTTGCCCATCAATGG
CCCCCTCCCAAAGCGACAAAACTCCCTCCCTAGCCGAGGATTATTTGTTG
GAAAAAGAGAAGCAAGATGTAGCTACCCCACCTGTGGTAGTAAAAGAAGT
TGAGAGTGCAGTGACTGCCTCTTCTGTGGAAGGTGCCACTGATAAAGTTG
AAGAAACACCTGCTGCCGCCGCTGTTGAAGAAAGCAAAGAAGACGCCCCT
GCTCCTGCCGCTGAAGAAAGCACTGAAGCCAGTTCTGCTTCTCCTGAGGA
CAGCACTAGTGATACGGCTCCAGCTGCTGCTGAGGAAAGCAGTGAAACTA
CGGAAGAGGAAAACTCAGGTGATCAGGAAGCCTCAGAAGAGACACCACAA
ATAAAGCTGGAGACTGCACCGGCAGATTTCCGTTTCCCAACCACAAATCA
AACAAGGCACTGCTTTACCCGATATATTGAGTATCATCGGTGTGTACCTG
CTAAGGGAGAGGGTGCTCCACAGTGTGATAAGTTTGCAAAATATTACCGT
GCTCTGTGCCC
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