CF834391

Overview
NameCF834391
Unique NameCF834391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig417 contig Csv1_Contig417:56..545. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
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BLAST of CF834391 vs. ExPASy Swiss-Prot
Match: TOM6_ARATH (Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana GN=TOM6 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.805e-11
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 2 
Query:   41 MFPGLLMKKPDKAAALKQLRSHVAMFGTSVVVIRVTPYLLHY 166
            MFPG+ M+KPDKA ALKQLR+HVA+FG+ VV+IR  PY+L Y
Sbjct:    1 MFPGMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSY 42
The following BLAST results are available for this feature:
BLAST of CF834391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TOM6_ARATH8.805e-1169.05Mitochondrial import receptor subunit TOM6 homolog... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05H08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834391 ID=CF834391; Name=CF834391; organism=Citrus sinensis; type=EST; length=490bp
CAACAGAGTAACCATAAAGAGGGGTTAAGCCGAAGCAAGGATGTTTCCGG
GCCTTTTAATGAAGAAGCCAGACAAGGCGGCGGCCTTGAAGCAGCTGCGG
AGCCACGTGGCCATGTTCGGGACCTCCGTCGTTGTGATTCGCGTCACCCC
CTACCTTCTTCACTATTTCTCCAGAGAAAAAGAAGAGCTCAAGCTCGAAT
TCTAACTCTCTCTTTCTCTCTCTAGCTGAACCGTCTTTTTCTCTGTGTTT
GGTGGTGCGGCAGCTGTAAGATGAAGATGAAGAGAAAGTGGCGCGCTGTT
TAGAAGTGTCATAATTGTTTTTAATGTATGCCCTGGATTTGGCAGGGGTA
ACATACCTGTAACTTGTTATTGAGTTTGAAGCGTGGGTGGGTACTTTCGT
AAAATGCAATAACTGGTCTATGATTATTCTTGTTGAATTTACTTTTGGTA
GTAGTATCTACTAATTAATTTCTCAAAAAAAAAAAAAAAA
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