CF834457

Overview
NameCF834457
Unique NameCF834457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1735 contig Csv1_Contig1735:177..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF834457 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.444e-13
Identity = 29/70 (41.43%), Postives = 35/70 (50.00%), Query Frame = -1 
Query:   35 DGIVGHPGDKTLVNWFNLKKVSVSIYNLVHCPSVCDSCGKLSNKIGMFYGDGVRRLVLVRDDDQPLRLGL 244
            DG+ G PG  TL +WF ++K  V  Y    CPSVCDSC  L + IG              DDD  +RL L
Sbjct:  139 DGVKGEPGPNTLCSWFKIEKAGVLGYKFRFCPSVCDSCTTLCSDIGRH-----------SDDDGQIRLAL 197

HSP 2 Score: 39.2762 bits (90), Expect = 1.444e-13
Identity = 28/91 (30.77%), Postives = 37/91 (40.66%), Query Frame = -3 
Query:  246 LLEVKNGTSGGFSIHGGTNGECPLAAVQRSSPTERDHYVRLLPFDNSP-VVRESTDFNL-----------IDPVWTVGYYNASLGKWFVPT 482
            L  +     GG ++   T   CP   VQR S  +    V     D+   VVR STD N+              VW +  Y+ S GKW+V T
Sbjct:   48 LSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRDRLCSTSTVWRLDNYDNSAGKWWVTT 138
The following BLAST results are available for this feature:
BLAST of CF834457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ASP_THECC1.444e-1341.4321 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05J03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834457 ID=CF834457; Name=CF834457; organism=Citrus sinensis; type=EST; length=487bp
ACCTAGAGGATCTTGCAGGATTAGGAGCTGGAAATAACCCCAACCGGAGA
GGCTGATCATCATCACGAACCAGAACCAAACGGCGAACGCCGTCCCCATA
AAACATGCCGATTTTGTTACTCAGTTTACCGCAAGAATCGCAAACAGATG
GACAATGAACAAGATTGTATATACTGACACTAACTTTCTTAAGGTTAAAC
CAATTTACCAACGTTTTATCTCCTGGGTGGCCGACGATTCCATCCGGTTG
GTACAAACCATTTTCCTAATGAAGCATTATAGTAACCAACTGTCCATACT
GGATCTATCAAGTTGAAATCAGTGGATTCCCGGACAACTGGAGAATTGTC
AAACGGTAATAATCTTACATAATGATCCCTTTCCGTAGGAGAACTTCGTT
GGACAGCGGCCAACGGACACTCTCCATTTGTGCCTCCATGTATACTGAAT
CCACCACTAGTGCCATTTTTGACTTCGAGAAGCTTAT
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