CF834465

Overview
NameCF834465
Unique NameCF834465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834465_ssr354 microsatellite CF834465_ssr354:354..363. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7663 contig Csv1_Contig7663:68..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834465 vs. ExPASy Swiss-Prot
Match: RLA32_ARATH (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.596e-21
Identity = 50/63 (79.37%), Postives = 58/63 (92.06%), Query Frame = -1
Query:  300 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTS 488
            MGVF++VC+  GGEW+ KQ EG DLEASA+STY+LQRKLVQT+LSADSSGGVQSSFSLV+PTS
Sbjct:    1 MGVFSFVCKSKGGEWTAKQHEG-DLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSPTS 62          
BLAST of CF834465 vs. ExPASy Swiss-Prot
Match: RLA31_ARATH (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana GN=RPP3A PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.746e-20
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = -1
Query:  300 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTS 488
            MGVFT+VC+  GG WS KQ EG +LE+SA+STYELQRKLVQ SLSADSSGGVQSSFSLV+PTS
Sbjct:    1 MGVFTFVCKNGGGAWSAKQHEG-ELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSPTS 62          
BLAST of CF834465 vs. ExPASy Swiss-Prot
Match: RLA3_MAIZE (60S acidic ribosomal protein P3 OS=Zea mays GN=RPP3A PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 8.969e-17
Identity = 51/121 (42.15%), Postives = 63/121 (52.07%), Query Frame = -1
Query:  126 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDEDMGFSLFD 488
            MGV+T+VCR NGGEW+ KQ   G++EASAA+ YELQR+LV  + +ADS  GVQSSFS+VTP+S                                               SD+DMGFSLFD
Sbjct:    1 MGVYTFVCRNNGGEWTAKQ-HSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTPSSAVFQVIVGAVGGGAMMVSGGGGGGAAASGGAAAEAPKEEKKEEEKEESDDDMGFSLFD 120          
BLAST of CF834465 vs. ExPASy Swiss-Prot
Match: RLA3_ORYSJ (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 9.917e-16
Identity = 39/63 (61.90%), Postives = 54/63 (85.71%), Query Frame = -1
Query:  300 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTS 488
            MGV+T+VCR +G EW+ KQ++G +LEASAA+ YELQR+LV  + +ADS+ GVQSSFS+V+P+S
Sbjct:    1 MGVYTFVCRSSGDEWTAKQLKG-ELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSPSS 62          
The following BLAST results are available for this feature:
BLAST of CF834465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RLA32_ARATH4.596e-2179.3760S acidic ribosomal protein P3-2 OS=Arabidopsis t... [more]
RLA31_ARATH1.746e-2079.3760S acidic ribosomal protein P3-1 OS=Arabidopsis t... [more]
RLA3_MAIZE8.969e-1742.1560S acidic ribosomal protein P3 OS=Zea mays GN=RPP... [more]
RLA3_ORYSJ9.917e-1661.9060S acidic ribosomal protein P3 OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05J09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834465 ID=CF834465; Name=CF834465; organism=Citrus sinensis; type=EST; length=506bp
TCCCTCANAAAGGAACAAAACTCTCCCCTTATAAAATCTCAGCCAATGGC
AGAGCAATATTTGAGTCGACATAAAAGCATAACAAAATACAAGTCCCAAG
AACAGAACTGGAATTATATAACCTAATCAAAAAGAGAGAAACCCATGTCT
TCATCACTCTCCTCTTTCTCTTCCTTCTTCTCCTCAGCAGCAGGAGCCTC
AGCAGCTGCTCCGCCGCCTCCTGAAGGAGCTGAAGCTGCAGCTCCACCTC
CAATGAAACCACCACCAACAGCACCACCAATAATCACCTGGAAAACAGCA
GACGTAGGTGTGACGAGGGAGAAAGAGGACTGGACCCCACCAGAAGAATC
AGCAGAGAGAGAGGTCTGGACCAGCTTTCTCTGGAGCTCGTATGTTGATG
CTGCAGAGGCTTCTAAGTCTCCCCCCTCTATCTGCTTTCCGCTCCATTCT
CCCCCATTTTTTCTGCACACGTATGTGAAAACTCCCATTTTCACCGGCAC
GAGGCC
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