CF834466

Overview
NameCF834466
Unique NameCF834466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834466_ssr145 microsatellite CF834466_ssr145:145..154. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7663 contig Csv1_Contig7663:67..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834466 vs. ExPASy Swiss-Prot
Match: RLA32_ARATH (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.301e-19
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 2 
Query:   20 MGVFTYVRLKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTS 208
            MGVF++V    GGEW+ KQ EG DLEASA+STY+LQRKLVQT+LSADSSGGVQSSFSLV+PTS
Sbjct:    1 MGVFSFVCKSKGGEWTAKQHEG-DLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSPTS 62
[Close]
BLAST of CF834466 vs. ExPASy Swiss-Prot
Match: RLA31_ARATH (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana GN=RPP3A PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.634e-18
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 2 
Query:   20 MGVFTYVRLKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTS 208
            MGVFT+V    GG WS KQ EG +LE+SA+STYELQRKLVQ SLSADSSGGVQSSFSLV+PTS
Sbjct:    1 MGVFTFVCKNGGGAWSAKQHEG-ELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSPTS 62
[Close]
BLAST of CF834466 vs. ExPASy Swiss-Prot
Match: RLA3_MAIZE (60S acidic ribosomal protein P3 OS=Zea mays GN=RPP3A PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.870e-14
Identity = 48/121 (39.67%), Postives = 60/121 (49.59%), Query Frame = 2 
Query:   20 MGVFTYVRLKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDMGFSLFD 382
            MGV+T+V   NGGEW+ KQ   G++EASAA+ YELQR+LV  + +ADS  GVQSSFS+VTP+S                                                D+DMGFSLFD
Sbjct:    1 MGVYTFVCRNNGGEWTAKQ-HSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTPSSAVFQVIVGAVGGGAMMVSGGGGGGAAASGGAAAEAPKEEKKEEEKEESDDDMGFSLFD 120
[Close]
BLAST of CF834466 vs. ExPASy Swiss-Prot
Match: RLA3_ORYSJ (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.068e-13
Identity = 37/63 (58.73%), Postives = 52/63 (82.54%), Query Frame = 2 
Query:   20 MGVFTYVRLKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTS 208
            MGV+T+V   +G EW+ KQ++G +LEASAA+ YELQR+LV  + +ADS+ GVQSSFS+V+P+S
Sbjct:    1 MGVYTFVCRSSGDEWTAKQLKG-ELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSPSS 62
The following BLAST results are available for this feature:
BLAST of CF834466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RLA32_ARATH4.301e-1977.7860S acidic ribosomal protein P3-2 OS=Arabidopsis t... [more]
RLA31_ARATH1.634e-1877.7860S acidic ribosomal protein P3-1 OS=Arabidopsis t... [more]
RLA3_MAIZE1.870e-1439.6760S acidic ribosomal protein P3 OS=Zea mays GN=RPP... [more]
RLA3_ORYSJ2.068e-1358.7360S acidic ribosomal protein P3 OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05J09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834466 ID=CF834466; Name=CF834466; organism=Citrus sinensis; type=EST; length=569bp
CGGTCTCGTGCCGGTGAAAATGGGAGTTTTCACATACGTGCGCTTAAAAA
ATGGGGGAGAATGGAGCGGAAAGCAGATAGAGGGGGGAGACTTAGAAGCC
TCTGCAGCATCAACATACGAGCTCCAGAGAAAGCTGGTCCAGACCTCTCT
CTCTGCTGATTCTTCTGGTGGGGTCCAGTCCTCTTTCTCCCTCGTCACAC
CTACGTCTGCTGTTTTCCAGGTGATTATTGGTGGTGCTGTTGGTGGTGGT
TTCATTGGAGGTGGAGCTGCAGCTTCAGCTCCTTCAGGAGGCGGCGGAGC
AGCTGCTGAGGCTCCTGCTGCTGAGGAGAAGAAGGAAGAGAAAGAGGAGA
GTGATGAAGACATGGGTTTCTCTCTTTTTGATTAGGTTATATAATTCCAG
TTCTCTTCTTGGGACTTGTATTTTGTTATGCTTTTATGTCGACTCAAATA
TTGCTCTGCCATTGGCTTAGATTTTATTTTTGTGAGAGTTTTGTTACTTT
GTGAGGGATTTTTGTCCACCATCAATATTAAGTAAACATGATTAGCTTGC
TGCAAAAAAAAAAAAAAAA
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