CF834482

Overview
NameCF834482
Unique NameCF834482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1073 contig Csv1_Contig1073:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834482 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 4.818e-87
Identity = 148/177 (83.62%), Postives = 162/177 (91.53%), Query Frame = 1
Query:   97 VAKRLEKHYPILFRGVNGTVAHEFIVDLRGLNNTAGIQPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRDCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLPAAHVAEEQAASTA 627
            +AKRLE +YP+LFRGVNGTVAHEFI+DLRG  NTAGI+PEDVAKRLMDYGFHGPTMSWPV GTLMIEPTESESK ELDR CDALISIR+EIA++E G AD+HNNVLKGAPHPPSLLM D WTKPYSREYAA+PA+WLR AKFWP TGRVDNVYGDRNL+CTLLPA+   EEQAA+TA
Sbjct:  881 MAKRLESYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVAGTLMIEPTESESKAELDRFCDALISIRKEIAEVEKGNADVHNNVLKGAPHPPSLLMADAWTKPYSREYAAFPAAWLRGAKFWPTTGRVDNVYGDRNLVCTLLPASQAVEEQAAATA 1057          
BLAST of CF834482 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 8.218e-87
Identity = 149/175 (85.14%), Postives = 160/175 (91.43%), Query Frame = 1
Query:   97 VAKRLEKHYPILFRGVNGTVAHEFIVDLRGLNNTAGIQPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRDCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLPAAHVAEEQAAS 621
            +AKRLEKHYP+LFRGVNGT AHEFI+DLRG  NTAGI+PEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK ELDR CDALISIREEIAQIE G  DI+NNVLKGAPHPPS+LM D WTKPYSREYAAYPA WLR AKFWP TGRVDNVYGDRNLICTLLP + +AEE+AA+
Sbjct:  860 MAKRLEKHYPVLFRGVNGTCAHEFIIDLRGFKNTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAQIEKGNVDINNNVLKGAPHPPSMLMADAWTKPYSREYAAYPAPWLRSAKFWPTTGRVDNVYGDRNLICTLLPVSEMAEEKAAT 1034          
BLAST of CF834482 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 310.457 bits (794), Expect = 4.985e-84
Identity = 147/175 (84.00%), Postives = 156/175 (89.14%), Query Frame = 1
Query:   97 VAKRLEKHYPILFRGVNGTVAHEFIVDLRGLNNTAGIQPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRDCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLPAAHVAEEQAAS 621
            +AKRLEKHYP+LFRGVNGTVAHEFI+DLRG  NTAGI+PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK ELDR CDALISIREEIAQIE G AD+ NNVLKGAPHPPSLLM DTW KPYSREYAA+PA WLR +KFWP TGRVDNVYGDR L+CTLLP     EEQ A+
Sbjct:  863 MAKRLEKHYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAQIEKGNADVQNNVLKGAPHPPSLLMADTWKKPYSREYAAFPAPWLRSSKFWPTTGRVDNVYGDRKLVCTLLP----EEEQVAA 1033          
BLAST of CF834482 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 1.894e-83
Identity = 147/175 (84.00%), Postives = 157/175 (89.71%), Query Frame = 1
Query:   97 VAKRLEKHYPILFRGVNGTVAHEFIVDLRGLNNTAGIQPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRDCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLPAAHVAEEQAAS 621
            +AKRLE HYP+LFRGVNGTVAHEFI+DLRG  NTAGI+PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK ELDR CDALISIREEI+QIE G AD +NNVLKGAPHPPSLLM DTW KPYSREYAA+PA WLR +KFWP TGRVDNVYGDRNL+CTL PA    EEQAA+
Sbjct:  869 MAKRLESHYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEISQIEKGNADPNNNVLKGAPHPPSLLMADTWKKPYSREYAAFPAPWLRSSKFWPTTGRVDNVYGDRNLVCTLQPA---NEEQAAA 1040          
BLAST of CF834482 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.149e-80
Identity = 144/177 (81.36%), Postives = 154/177 (87.01%), Query Frame = 1
Query:   97 VAKRLEKHYPILFRGVNGTVAHEFIVDLRGLNNTAGIQPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRDCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLPAAHVAEEQAASTA 627
            +AKRLE HYPILFRGVNGTVAHEFIVDLR L  TAGI+PEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK ELDR CDALISIR+EIA+IE G  D++NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P     EE+A +TA
Sbjct:  862 MAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGNVDLNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQPPQEY-EEKAEATA 1037          
BLAST of CF834482 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 1.960e-80
Identity = 144/177 (81.36%), Postives = 153/177 (86.44%), Query Frame = 1
Query:   97 VAKRLEKHYPILFRGVNGTVAHEFIVDLRGLNNTAGIQPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRDCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLPAAHVAEEQAASTA 627
            +AKRLE HYPILFRGVNGTVAHEFIVDLR L  TAGI+PEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK ELDR CDALISIR+EIA+IE G  D +NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P     EE+A +TA
Sbjct:  859 MAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGNVDFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQPPQEY-EEKAEATA 1034          
BLAST of CF834482 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 1.960e-80
Identity = 144/177 (81.36%), Postives = 153/177 (86.44%), Query Frame = 1
Query:   97 VAKRLEKHYPILFRGVNGTVAHEFIVDLRGLNNTAGIQPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRDCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLPAAHVAEEQAASTA 627
            +AKRLE HYPILFRGVNGTVAHEFIVDLR L  TAGI+PEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK ELDR CDALISIR+EIA+IE G  D +NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P     EE+A +TA
Sbjct:  859 MAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGNVDFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQPPQEY-EEKAEATA 1034          
BLAST of CF834482 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 2.560e-80
Identity = 144/177 (81.36%), Postives = 153/177 (86.44%), Query Frame = 1
Query:   97 VAKRLEKHYPILFRGVNGTVAHEFIVDLRGLNNTAGIQPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRDCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLPAAHVAEEQAASTA 627
            +AKRLE HYPILFRGVNGTVAHEFIVDLR L  TAGI+PEDVAKRL+DYGFHGPTMSWPVPGTLMIEPTESESK ELDR CDALISIR+EIA+IE G  D +NNV+KGAPHPP LLM D WTKPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P     EE+A +TA
Sbjct:  859 MAKRLENHYPILFRGVNGTVAHEFIVDLRPLKTTAGIEPEDVAKRLIDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGTVDFNNNVIKGAPHPPQLLMADKWTKPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQPPQEY-EEKAEATA 1034          
BLAST of CF834482 vs. ExPASy Swiss-Prot
Match: GCSP_THEEB (Glycine dehydrogenase [decarboxylating] OS=Thermosynechococcus elongatus (strain BP-1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.671e-67
Identity = 106/161 (65.84%), Postives = 128/161 (79.50%), Query Frame = 1
Query:   97 VAKRLEKHYPILFRGVNGTVAHEFIVDLRGLNNTAGIQPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRDCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICT 579
            +AKRLE +YP+L++G +G VAHE I+DLR L  +AGI+ ED+AKRLMDYGFH PT+SWPVPGTLMIEPTESE+K ELDR C+A+I+IR EIA+IE G +D   N LK APHP  +L  + W  PYSRE AAYPA WLR  KFWPA  R+DN YGDR+L+CT
Sbjct:  787 IAKRLEPYYPVLYKGAHGLVAHECILDLRPLKKSAGIEVEDIAKRLMDYGFHAPTVSWPVPGTLMIEPTESETKAELDRFCEAMIAIRSEIAEIEAGVSDRQQNPLKNAPHPALMLATEPWPYPYSREVAAYPAPWLREYKFWPAVARIDNAYGDRHLVCT 947          

HSP 2 Score: 45.0542 bits (105), Expect = 2.671e-67
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 3
Query:    6 ILPLSYTYIAMMGSKGLTEASKIAILNANYSGK 104
            ILP+S+ YI +MG  GLT A+ IAILNANY  K
Sbjct:  757 ILPISWMYITLMGGVGLTRATAIAILNANYIAK 789          
BLAST of CF834482 vs. ExPASy Swiss-Prot
Match: GCSP_ANAVT (Glycine dehydrogenase [decarboxylating] OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gcvP PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.724e-67
Identity = 103/164 (62.80%), Postives = 127/164 (77.44%), Query Frame = 1
Query:   97 VAKRLEKHYPILFRGVNGTVAHEFIVDLRGLNNTAGIQPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKEELDRDCDALISIREEIAQIENGKADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 588
            +AKRLE +YP+L++G NG VAHE I+DLR L  +A I+ +D+AKRL+DYGFH PT+SWPV GT+M+EPTESES+ ELDR CDALI+IR+EIA IE GK D HNN+LK APH    L+   W  PYSRE AAYP SW R  KFWP+ GR+D  +GDRN +C+ LP
Sbjct:  806 IAKRLETYYPVLYKGQNGLVAHECILDLRALKKSANIEIDDIAKRLIDYGFHAPTVSWPVTGTIMVEPTESESQAELDRFCDALIAIRQEIAAIEAGKMDTHNNLLKNAPHTIESLIVGEWLHPYSREQAAYPVSWTREYKFWPSVGRIDAAFGDRNFVCSCLP 969          

HSP 2 Score: 47.7506 bits (112), Expect = 7.724e-67
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 3
Query:    6 ILPLSYTYIAMMGSKGLTEASKIAILNANYSGK 104
            IL +S+ YIAMMG+ GLT+A+K+AILNANY  K
Sbjct:  776 ILVISWMYIAMMGADGLTQATKVAILNANYIAK 808          
The following BLAST results are available for this feature:
BLAST of CF834482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCSP_PEA4.818e-8783.62Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_SOLTU8.218e-8785.14Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP2_ARATH4.985e-8484.00Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP1_ARATH1.894e-8384.00Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSPA_FLAPR1.149e-8081.36Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_FLAAN1.960e-8081.36Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR1.960e-8081.36Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSP_FLATR2.560e-8081.36Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_THEEB2.671e-6765.84Glycine dehydrogenase [decarboxylating] OS=Thermos... [more]
GCSP_ANAVT7.724e-6762.80Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05J20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834482 ID=CF834482; Name=CF834482; organism=Citrus sinensis; type=EST; length=650bp
CACTTATCCTGCCTTTATCATATACGTACATAGCTATGATGGGTTCTAAA
GGACTCACTGAGGCTTCGAAGATAGCTATTCTGAATGCAAACTACAGTGG
CAAAACGTTTGGAGAAACATTACCCCATCCTTTTCCGTGGAGTCAATGGA
ACAGTTGCTCATGAATTCATTGTGGACTTAAGAGGCTTGAATAATACTGC
CGGGATACAGCCCGAAGATGTTGCCAAACGTCTTATGGATTATGGATTCC
ATGGACCAACAATGTCATGGCCTGTTCCAGGCACACTTATGATTGAACCA
ACTGAAAGTGAAAGCAAGGAAGAGTTGGACAGGGATTGCGATGCTCTCAT
CTCCATCAGAGAAGAAATTGCACAAATTGAAAATGGGAAGGCAGATATCC
ACAACAATGTCCTGAAGGGGGCGCCTCATCCACCATCTTTGCTCATGGGA
GATACATGGACTAAACCATACTCTCGAGAATATGCAGCCTATCCTGCTTC
CTGGCTCCGGTTTGCTAAGTTCTGGCCTGCTACAGGACGCGTTGACAATG
TGTATGGTGACCGCAACCTCATCTGCACCCTTCTTCCAGCTGCACATGTT
GCTGAGGAGCAGGCTGCATCCACTGCTTAGAGTTGCCATCAACATGCCCC
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