CF834499

Overview
NameCF834499
Unique NameCF834499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12448 contig Csv1_Contig12448:1628..2257. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: PSMD1_RAT (26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus GN=Psmd1 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 7.053e-64
Identity = 114/189 (60.32%), Postives = 151/189 (79.89%), Query Frame = 1
Query:   64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPS 630
            +LGF+L+  PEQ P +VSLLSESYNPHVRYGAA+A+G+ CAGTG  EAI+LLEP+T+D V++VRQGALIA A++M+Q  E    +V  FR+   K+I DKH+D M+K GAILA GILDAGG NVTI L S+T H  + +VVG+ VF+QFW+W+PL +F+SLA++PT +IGLN DLK+P+ ++ S+ KPS
Sbjct:  621 SLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGVCCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLSLAYTPTCIIGLNKDLKMPKVQYKSNCKPS 809          
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: PSMD1_PONAB (26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii GN=PSMD1 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 7.053e-64
Identity = 115/189 (60.85%), Postives = 151/189 (79.89%), Query Frame = 1
Query:   64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPS 630
            +LGF+L+  PEQ P +VSLLSESYNPHVRYGAA+A+GI CAGTG  EAI+LLEP+T+D V++VRQGALIA A++M+Q  E    +V  FR+   K+I DKH+D M+K GAILA GILDAGG NVTI L S+T H  + +VVG+ VF+QFW+W+PL +F+SLA++PT +IGLN DLK+P+ ++ S+ KPS
Sbjct:  621 SLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPS 809          
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: PSMD1_MOUSE (26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus GN=Psmd1 PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 7.053e-64
Identity = 115/189 (60.85%), Postives = 151/189 (79.89%), Query Frame = 1
Query:   64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPS 630
            +LGF+L+  PEQ P +VSLLSESYNPHVRYGAA+A+GI CAGTG  EAI+LLEP+T+D V++VRQGALIA A++M+Q  E    +V  FR+   K+I DKH+D M+K GAILA GILDAGG NVTI L S+T H  + +VVG+ VF+QFW+W+PL +F+SLA++PT +IGLN DLK+P+ ++ S+ KPS
Sbjct:  621 SLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPS 809          
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: PSMD1_HUMAN (26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1 PE=1 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 7.053e-64
Identity = 115/189 (60.85%), Postives = 151/189 (79.89%), Query Frame = 1
Query:   64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPS 630
            +LGF+L+  PEQ P +VSLLSESYNPHVRYGAA+A+GI CAGTG  EAI+LLEP+T+D V++VRQGALIA A++M+Q  E    +V  FR+   K+I DKH+D M+K GAILA GILDAGG NVTI L S+T H  + +VVG+ VF+QFW+W+PL +F+SLA++PT +IGLN DLK+P+ ++ S+ KPS
Sbjct:  621 SLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPS 809          
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: PSMD1_CHICK (26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus GN=PSMD1 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.571e-63
Identity = 115/189 (60.85%), Postives = 150/189 (79.37%), Query Frame = 1
Query:   64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPS 630
            +LGF+L+  PEQ P +VSLLSESYNPHVRYGAA+A+GI CAGTG  EAI+LLEP+T+D V++VRQGALIA A++M+Q  E    +V  FR+   K+I DKH+D M+K GAILA GILDAGG NV I L S+T H  + +VVG+ VF+QFW+W+PL +F+SLAF+PT +IGLN DLK+P+ ++ S+ KPS
Sbjct:  621 SLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVSQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVIISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLSLAFTPTCVIGLNKDLKMPKVQYKSNCKPS 809          
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: PSMD1_DROME (26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila melanogaster GN=Rpn2 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 5.588e-61
Identity = 112/190 (58.95%), Postives = 149/190 (78.42%), Query Frame = 1
Query:   64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPS 630
            A+GF+L+  PEQ P +VSLL+ESYNPHVRYGAA+A+GI+CAGTGL EAI+LLEP+   D V+FVRQGALIA AM+++Q  + +  +   FR+   ++I +KHED M+K GAILA GI+DAGGRN T+ L S+T H  + AVVG+  F+Q+WYW+PL + +SLAF+PT +IGLN DLK+P+ E+ S AKPS
Sbjct:  636 AIGFILFRSPEQCPSVVSLLAESYNPHVRYGAAMALGIACAGTGLREAIALLEPMVKFDPVNFVRQGALIASAMILIQHTDQSCPKSTFFRQLYAEVISNKHEDVMAKYGAILAQGIIDAGGRNATLSLQSRTGHTNLQAVVGMLAFTQYWYWFPLAHTLSLAFTPTCVIGLNSDLKMPKMEYKSAAKPS 825          
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: RPN2_SCHPO (26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe GN=rpn2 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.206e-55
Identity = 100/188 (53.19%), Postives = 141/188 (75.00%), Query Frame = 1
Query:   64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKP 627
            ALGF+ + +P      V LL +SYNPHVRYG+A+A+GI+CA +G + A+ LL  L  D  DFVRQGA+IA AM++ Q N+  +S+V   R+  E++I +KHED ++K+GA LA GI+DAGGRNVTI L + T   K++A+VGL+VF Q+WYW+PL +F+SL+FSPTALIGL+ +L  P+F F+S+ +P
Sbjct:  604 ALGFICFKDPNALISTVELLVDSYNPHVRYGSAIALGIACANSGSNAALDLLSRLVEDATDFVRQGAMIAQAMILTQHNDQLNSKVSGIRKHFEQVINEKHEDALAKLGATLAQGIIDAGGRNVTIALQTATGSLKLSAIVGLTVFLQYWYWFPLTHFMSLSFSPTALIGLDKNLNAPKFSFISNVRP 791          
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: PSMD1_DICDI (26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium discoideum GN=psmD1 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.630e-52
Identity = 96/188 (51.06%), Postives = 140/188 (74.47%), Query Frame = 1
Query:   67 LGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPS 630
            +GFVL  +PE+ P+ ++LL+ESYNPHVRYGAA A+GI+CAGTG  +A+ +L+ LT+D V +V+Q A I+MAMV++Q ++       T R+     I DK ED+MSK GA+LA G++DAGGRN TI+L S + H  + A+VG++ F QFWYW+P+ +F+ LA +PT++IGLN +L++P F F S+ +PS
Sbjct:  611 IGFVLSRQPEKCPKAIALLAESYNPHVRYGAAFALGIACAGTGQRDALEILKSLTTDSVGYVKQAAWISMAMVLIQTSKELVPEAETARKLFATCISDKREDSMSKFGAVLAFGVIDAGGRNSTIQLHSPSGHKNMNAIVGIAGFLQFWYWFPMTHFMGLALTPTSIIGLNKNLEMPVFTFKSNCRPS 798          
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: RPN2_ASHGO (26S proteasome regulatory subunit RPN2 OS=Ashbya gossypii GN=RPN2 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.073e-51
Identity = 98/189 (51.85%), Postives = 139/189 (73.54%), Query Frame = 1
Query:   64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKIT-AVVGLSVFSQFWYWYPLIYFISLAFSPTALIGL-NYDLKVPRFEFLSHAK 624
            ALGFVL  +    PRIV LLSES+NPHVR G A A+G++CAG GL  AI +LEPLT+D VDFVRQ A+IA++M+++Q  E  + +V     QL  +I +KH++ ++K GA +A GI++AGGRNVTI+L +       T +V+GL++F+QFWYW+PL +F+SL+F+PT  IG+ ++DLK+P+F F  H K
Sbjct:  582 ALGFVLIRDYTTVPRIVELLSESHNPHVRCGTAFALGVACAGRGLQAAIDVLEPLTNDPVDFVRQAAMIALSMILIQQTEKTNVKVRDVNEQLRNVIANKHQEGLAKFGACVAQGIINAGGRNVTIQLENSEMGTLNTKSVIGLAMFTQFWYWFPLAHFLSLSFTPTTTIGVRSHDLKIPKFSFHCHTK 770          
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: RPN2_YEAST (26S proteasome regulatory subunit RPN2 OS=Saccharomyces cerevisiae GN=RPN2 PE=1 SV=4)

HSP 1 Score: 184.496 bits (467), Expect = 3.888e-46
Identity = 93/189 (49.21%), Postives = 133/189 (70.37%), Query Frame = 1
Query:   64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKIT-AVVGLSVFSQFWYWYPLIYFISLAFSPTALIGL-NYDLKVPRFEFLSHAK 624
            ALGFVL  +    PRIV LLS+S+N HVR G A A+GI+CAG GL  AI +L+PLT D VDFVRQ A+IA++M+++Q  E  + +V    +    +I +KH++ ++K GA +A GI++AGGRNVTI+L +       T +VVGL +FSQFWYW+PL +F+SL+F+PT +IG+   D  +P+F+   +AK
Sbjct:  590 ALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQFWYWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNCYAK 778          
The following BLAST results are available for this feature:
BLAST of CF834499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PSMD1_RAT7.053e-6460.3226S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_PONAB7.053e-6460.8526S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_MOUSE7.053e-6460.8526S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_HUMAN7.053e-6460.8526S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_CHICK1.571e-6360.8526S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_DROME5.588e-6158.9526S proteasome non-ATPase regulatory subunit 1 OS=... [more]
RPN2_SCHPO1.206e-5553.1926S proteasome regulatory subunit rpn2 OS=Schizosa... [more]
PSMD1_DICDI1.630e-5251.0626S proteasome non-ATPase regulatory subunit 1 OS=... [more]
RPN2_ASHGO3.073e-5151.8526S proteasome regulatory subunit RPN2 OS=Ashbya g... [more]
RPN2_YEAST3.888e-4649.2126S proteasome regulatory subunit RPN2 OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834499 ID=CF834499; Name=CF834499; organism=Citrus sinensis; type=EST; length=630bp
CGCCAGCTGCTCCTTTTAGCCGTATCGGATGTGAGTGATGATGTCAGGAG
GACCTCTGTTCTAGCACTTGGTTTTGTCCTGTACTCTGAGCCGGAGCAGA
CTCCTCGAATTGTGTCTCTGCTGTCTGAGTCATATAATCCACATGTTCGC
TATGGTGCGGCTCTTGCAGTAGGTATCTCCTGTGCAGGTACAGGACTGAG
CGAGGCTATATCATTGCTGGAGCCTCTTACATCAGATGTCGTTGATTTTG
TTCGCCAAGGTGCACTCATTGCAATGGCTATGGTCATGGTCCAGATTAAT
GAAGCTAATGATTCTCGTGTTGGAACCTTCAGGCGACAATTGGAAAAAAT
AATTCTTGATAAGCATGAAGATACCATGAGCAAGATGGGAGCAATCTTGG
CCTCTGGAATCCTTGATGCTGGTGGAAGGAACGTAACTATAAGATTGCTT
TCAAAGACGAAACATGATAAAATCACTGCAGTAGTTGGTCTCTCTGTTTT
TAGCCAGTTTTGGTATTGGTATCCCCTTATATACTTCATTAGCTTGGCGT
TTTCACCCACTGCTTTAATTGGACTCAACTATGACTTGAAAGTTCCTCGG
TTTGAATTCTTATCACATGCGAAACCTTCT
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