CF834499
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: PSMD1_RAT (26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus GN=Psmd1 PE=2 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 7.053e-64 Identity = 114/189 (60.32%), Postives = 151/189 (79.89%), Query Frame = 1 Query: 64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPS 630 +LGF+L+ PEQ P +VSLLSESYNPHVRYGAA+A+G+ CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E +V FR+ K+I DKH+D M+K GAILA GILDAGG NVTI L S+T H + +VVG+ VF+QFW+W+PL +F+SLA++PT +IGLN DLK+P+ ++ S+ KPS Sbjct: 621 SLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGVCCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLSLAYTPTCIIGLNKDLKMPKVQYKSNCKPS 809
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: PSMD1_PONAB (26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii GN=PSMD1 PE=2 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 7.053e-64 Identity = 115/189 (60.85%), Postives = 151/189 (79.89%), Query Frame = 1 Query: 64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPS 630 +LGF+L+ PEQ P +VSLLSESYNPHVRYGAA+A+GI CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E +V FR+ K+I DKH+D M+K GAILA GILDAGG NVTI L S+T H + +VVG+ VF+QFW+W+PL +F+SLA++PT +IGLN DLK+P+ ++ S+ KPS Sbjct: 621 SLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPS 809
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: PSMD1_MOUSE (26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus GN=Psmd1 PE=1 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 7.053e-64 Identity = 115/189 (60.85%), Postives = 151/189 (79.89%), Query Frame = 1 Query: 64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPS 630 +LGF+L+ PEQ P +VSLLSESYNPHVRYGAA+A+GI CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E +V FR+ K+I DKH+D M+K GAILA GILDAGG NVTI L S+T H + +VVG+ VF+QFW+W+PL +F+SLA++PT +IGLN DLK+P+ ++ S+ KPS Sbjct: 621 SLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPS 809
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: PSMD1_HUMAN (26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1 PE=1 SV=2) HSP 1 Score: 243.432 bits (620), Expect = 7.053e-64 Identity = 115/189 (60.85%), Postives = 151/189 (79.89%), Query Frame = 1 Query: 64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPS 630 +LGF+L+ PEQ P +VSLLSESYNPHVRYGAA+A+GI CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E +V FR+ K+I DKH+D M+K GAILA GILDAGG NVTI L S+T H + +VVG+ VF+QFW+W+PL +F+SLA++PT +IGLN DLK+P+ ++ S+ KPS Sbjct: 621 SLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPS 809
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: PSMD1_CHICK (26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus GN=PSMD1 PE=2 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 1.571e-63 Identity = 115/189 (60.85%), Postives = 150/189 (79.37%), Query Frame = 1 Query: 64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPS 630 +LGF+L+ PEQ P +VSLLSESYNPHVRYGAA+A+GI CAGTG EAI+LLEP+T+D V++VRQGALIA A++M+Q E +V FR+ K+I DKH+D M+K GAILA GILDAGG NV I L S+T H + +VVG+ VF+QFW+W+PL +F+SLAF+PT +IGLN DLK+P+ ++ S+ KPS Sbjct: 621 SLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVSQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVIISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLSLAFTPTCVIGLNKDLKMPKVQYKSNCKPS 809
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: PSMD1_DROME (26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila melanogaster GN=Rpn2 PE=1 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 5.588e-61 Identity = 112/190 (58.95%), Postives = 149/190 (78.42%), Query Frame = 1 Query: 64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTS-DVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPS 630 A+GF+L+ PEQ P +VSLL+ESYNPHVRYGAA+A+GI+CAGTGL EAI+LLEP+ D V+FVRQGALIA AM+++Q + + + FR+ ++I +KHED M+K GAILA GI+DAGGRN T+ L S+T H + AVVG+ F+Q+WYW+PL + +SLAF+PT +IGLN DLK+P+ E+ S AKPS Sbjct: 636 AIGFILFRSPEQCPSVVSLLAESYNPHVRYGAAMALGIACAGTGLREAIALLEPMVKFDPVNFVRQGALIASAMILIQHTDQSCPKSTFFRQLYAEVISNKHEDVMAKYGAILAQGIIDAGGRNATLSLQSRTGHTNLQAVVGMLAFTQYWYWFPLAHTLSLAFTPTCVIGLNSDLKMPKMEYKSAAKPS 825
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: RPN2_SCHPO (26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe GN=rpn2 PE=1 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 1.206e-55 Identity = 100/188 (53.19%), Postives = 141/188 (75.00%), Query Frame = 1 Query: 64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKP 627 ALGF+ + +P V LL +SYNPHVRYG+A+A+GI+CA +G + A+ LL L D DFVRQGA+IA AM++ Q N+ +S+V R+ E++I +KHED ++K+GA LA GI+DAGGRNVTI L + T K++A+VGL+VF Q+WYW+PL +F+SL+FSPTALIGL+ +L P+F F+S+ +P Sbjct: 604 ALGFICFKDPNALISTVELLVDSYNPHVRYGSAIALGIACANSGSNAALDLLSRLVEDATDFVRQGAMIAQAMILTQHNDQLNSKVSGIRKHFEQVINEKHEDALAKLGATLAQGIIDAGGRNVTIALQTATGSLKLSAIVGLTVFLQYWYWFPLTHFMSLSFSPTALIGLDKNLNAPKFSFISNVRP 791
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: PSMD1_DICDI (26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium discoideum GN=psmD1 PE=1 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 1.630e-52 Identity = 96/188 (51.06%), Postives = 140/188 (74.47%), Query Frame = 1 Query: 67 LGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKITAVVGLSVFSQFWYWYPLIYFISLAFSPTALIGLNYDLKVPRFEFLSHAKPS 630 +GFVL +PE+ P+ ++LL+ESYNPHVRYGAA A+GI+CAGTG +A+ +L+ LT+D V +V+Q A I+MAMV++Q ++ T R+ I DK ED+MSK GA+LA G++DAGGRN TI+L S + H + A+VG++ F QFWYW+P+ +F+ LA +PT++IGLN +L++P F F S+ +PS Sbjct: 611 IGFVLSRQPEKCPKAIALLAESYNPHVRYGAAFALGIACAGTGQRDALEILKSLTTDSVGYVKQAAWISMAMVLIQTSKELVPEAETARKLFATCISDKREDSMSKFGAVLAFGVIDAGGRNSTIQLHSPSGHKNMNAIVGIAGFLQFWYWFPMTHFMGLALTPTSIIGLNKNLEMPVFTFKSNCRPS 798
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: RPN2_ASHGO (26S proteasome regulatory subunit RPN2 OS=Ashbya gossypii GN=RPN2 PE=3 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 3.073e-51 Identity = 98/189 (51.85%), Postives = 139/189 (73.54%), Query Frame = 1 Query: 64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKIT-AVVGLSVFSQFWYWYPLIYFISLAFSPTALIGL-NYDLKVPRFEFLSHAK 624 ALGFVL + PRIV LLSES+NPHVR G A A+G++CAG GL AI +LEPLT+D VDFVRQ A+IA++M+++Q E + +V QL +I +KH++ ++K GA +A GI++AGGRNVTI+L + T +V+GL++F+QFWYW+PL +F+SL+F+PT IG+ ++DLK+P+F F H K Sbjct: 582 ALGFVLIRDYTTVPRIVELLSESHNPHVRCGTAFALGVACAGRGLQAAIDVLEPLTNDPVDFVRQAAMIALSMILIQQTEKTNVKVRDVNEQLRNVIANKHQEGLAKFGACVAQGIINAGGRNVTIQLENSEMGTLNTKSVIGLAMFTQFWYWFPLAHFLSLSFTPTTTIGVRSHDLKIPKFSFHCHTK 770
BLAST of CF834499 vs. ExPASy Swiss-Prot
Match: RPN2_YEAST (26S proteasome regulatory subunit RPN2 OS=Saccharomyces cerevisiae GN=RPN2 PE=1 SV=4) HSP 1 Score: 184.496 bits (467), Expect = 3.888e-46 Identity = 93/189 (49.21%), Postives = 133/189 (70.37%), Query Frame = 1 Query: 64 ALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQINEANDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKTKHDKIT-AVVGLSVFSQFWYWYPLIYFISLAFSPTALIGL-NYDLKVPRFEFLSHAK 624 ALGFVL + PRIV LLS+S+N HVR G A A+GI+CAG GL AI +L+PLT D VDFVRQ A+IA++M+++Q E + +V + +I +KH++ ++K GA +A GI++AGGRNVTI+L + T +VVGL +FSQFWYW+PL +F+SL+F+PT +IG+ D +P+F+ +AK Sbjct: 590 ALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQFWYWFPLAHFLSLSFTPTTVIGIRGSDQAIPKFQMNCYAK 778 The following BLAST results are available for this feature:
BLAST of CF834499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834499 ID=CF834499; Name=CF834499; organism=Citrus sinensis; type=EST; length=630bpback to top |