CF834500

Overview
NameCF834500
Unique NameCF834500
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length283
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:1266..1548. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834500 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = -2 
Query:  187 RIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 282
            R+HVTQEDFEMAVAKVMKK+TEKNMSLRKLWK
Sbjct:  388 RVHVTQEDFEMAVAKVMKKDTEKNMSLRKLWK 419
[Close]
BLAST of CF834500 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.404e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = -2 
Query:  187 RIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 282
            R+HVTQEDFEMAVAKVMKK+TEKNMSLRKLWK
Sbjct:  388 RVHVTQEDFEMAVAKVMKKDTEKNMSLRKLWK 419
The following BLAST results are available for this feature:
BLAST of CF834500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PRS8B_ARATH7.404e-1193.7526S protease regulatory subunit 8 homolog B OS=Ara... [more]
PRS8A_ARATH7.404e-1193.7526S protease regulatory subunit 8 homolog A OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05K06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834500 ID=CF834500; Name=CF834500; organism=Citrus sinensis; type=EST; length=283bp
TTTTTTTTTTTTTTTTTGATTGCAAATTTGTTTATCATAAGAGGCCCTAG
CGCAAGAAAAGACAACAGTCAGGCTAAAAGGGCCTATCGTGCAAATGTCC
CAGAACACGAGTGAGTGCCGTTAAGGACTACTTGAATCTTGCTCAGAAAA
TAAGCAAATACACAGCACAGCACATGGAAATGATTACTTCCACAACTTCC
GCAAGGACATGTTCTTCTCTGTTTCTTTCTTCATGACCTTGGCCACTGCC
ATCTCAAAATCTTCCTGTGTTACATGGATCCTT
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