CF834508

Overview
NameCF834508
Unique NameCF834508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834508_ssr131 microsatellite CF834508_ssr131:131..145. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834508 vs. ExPASy Swiss-Prot
Match: AROD6_ARATH (Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.153e-71
Identity = 134/159 (84.28%), Postives = 146/159 (91.82%), Query Frame = -2
Query:  238 YIAANDLRDTXXXXXXXXAELYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAPDKGTSVLFKVLSAFAFRNISLTKIELRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWSP 714
            +IA+N+LRDT        AE+YG+++LEDGIQDD SNVTRFVMLAREPIIPRTDRPFKTSIVFA +KGTSVLFKVLSAFAFR+ISLTKIE RP+ NRPIR+VDDANVGTAKHFEYMFY+DFEASMAE RAQNALAEVQEFTSFLRVLGSYPMDMTPWSP
Sbjct:  249 FIASNNLRDTAAIASARAAEIYGLEILEDGIQDDVSNVTRFVMLAREPIIPRTDRPFKTSIVFAHEKGTSVLFKVLSAFAFRDISLTKIESRPNHNRPIRVVDDANVGTAKHFEYMFYVDFEASMAEARAQNALAEVQEFTSFLRVLGSYPMDMTPWSP 407          
BLAST of CF834508 vs. ExPASy Swiss-Prot
Match: AROD3_ARATH (Arogenate dehydratase 3, chloroplastic OS=Arabidopsis thaliana GN=ADT3 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.079e-69
Identity = 132/159 (83.02%), Postives = 144/159 (90.57%), Query Frame = -2
Query:  238 YIAANDLRDTXXXXXXXXAELYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAPDKGTSVLFKVLSAFAFRNISLTKIELRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWSP 714
            +IAAN++RDT        AE+YG+++LEDGIQDD+SNVTRFVMLAREPIIPRTDRPFKTSIVFA +KGT VLFKVLSAFAFRNISLTKIE RP+ N PIRLVD+ANVGTAKHFEYMFYIDFEASMAE RAQNAL+EVQEFTSFLRVLGSYPMDMT WSP
Sbjct:  254 FIAANNIRDTAAIASARAAEIYGLEILEDGIQDDASNVTRFVMLAREPIIPRTDRPFKTSIVFAHEKGTCVLFKVLSAFAFRNISLTKIESRPNHNVPIRLVDEANVGTAKHFEYMFYIDFEASMAESRAQNALSEVQEFTSFLRVLGSYPMDMTSWSP 412          
BLAST of CF834508 vs. ExPASy Swiss-Prot
Match: AROD5_ARATH (Arogenate dehydratase 5, chloroplastic OS=Arabidopsis thaliana GN=ADT5 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.905e-66
Identity = 128/165 (77.58%), Postives = 140/165 (84.85%), Query Frame = -2
Query:  226 YIAANDLRDTXXXXXXXXAELYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAPD--KGTSVLFKVLSAFAFRNISLTKIELRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWSPFRGE 714
            YIAAN+L DT        AELYG+Q+L DGIQDD+ NVTRF+MLAR+PIIPRTDRPFKTSIVFA    KGTSVLFKVLSAFAFRNISLTKIE RPH+N P+R+V D NVGT+KHFEY FY+DFEASMAE RAQNALAEVQE+TSFLRVLGSYPMDMTPWS    E
Sbjct:  259 YIAANNLHDTAAVASARAAELYGLQILADGIQDDAGNVTRFLMLARDPIIPRTDRPFKTSIVFAAQEHKGTSVLFKVLSAFAFRNISLTKIESRPHQNCPVRVVGDENVGTSKHFEYTFYVDFEASMAEARAQNALAEVQEYTSFLRVLGSYPMDMTPWSTLPSE 423          
BLAST of CF834508 vs. ExPASy Swiss-Prot
Match: AROD4_ARATH (Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana GN=ADT4 PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.365e-64
Identity = 125/160 (78.12%), Postives = 137/160 (85.62%), Query Frame = -2
Query:  241 YIAANDLRDTXXXXXXXXAELYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAPD--KGTSVLFKVLSAFAFRNISLTKIELRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWS 714
            YI+ANDL DT        AELY +Q+L DGIQDD  NVTRF+MLAREPIIPRTDRPFKTSIVFA    KGTSVLFKVLSAFAFR+ISLTKIE RPH NRP+R+V D + GT+K+FEYMFY+DFEASMAE RAQNALAEVQE+TSFLRVLGSYPMDMTPWS
Sbjct:  258 YISANDLHDTAAVASARAAELYNLQILADGIQDDPGNVTRFLMLAREPIIPRTDRPFKTSIVFAAQEHKGTSVLFKVLSAFAFRDISLTKIESRPHHNRPLRVVGDGSFGTSKNFEYMFYVDFEASMAEPRAQNALAEVQEYTSFLRVLGSYPMDMTPWS 417          
BLAST of CF834508 vs. ExPASy Swiss-Prot
Match: AROD1_ARATH (Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.677e-46
Identity = 85/134 (63.43%), Postives = 114/134 (85.07%), Query Frame = -2
Query:  253 LYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAPDKGTSVLFKVLSAFAFRNISLTKIELRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 654
            +YG+ +L + IQDD +NVTRF++LAREP+IPRTDRP+KTSIVF+ ++G  VLFK L+ FA R+I+L+KIE RP R RP+R+VD +N G+AK+F+Y+FYIDFEASMA+ RAQ+AL  +QEF SF+R+LG YPMD+
Sbjct:  257 IYGLDILAENIQDDVNNVTRFLILAREPMIPRTDRPYKTSIVFSLEEGPGVLFKALAVFALRSINLSKIESRPQRRRPLRVVDGSNNGSAKYFDYLFYIDFEASMADTRAQHALGHLQEFASFIRILGCYPMDL 390          
BLAST of CF834508 vs. ExPASy Swiss-Prot
Match: AROD2_ARATH (Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.386e-39
Identity = 85/154 (55.19%), Postives = 108/154 (70.13%), Query Frame = -2
Query:  250 IAANDLRDTXXXXXXXXAELYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAPDKGTSVLFKVLSAFAFRNISLTKIELRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMT 711
            IA  +L D         A++YG+ ++   IQDD  NVTRF+MLAREPIIP T+R FKTSIVF+ ++G  VLFK L+ FA R I+LTKIE RP R  P+R       G  K+F+Y+FY+DFEASMA+  AQNAL  ++EF +FLRVLGSYP+D T
Sbjct:  231 IAFENLNDAAAVASEKAAKIYGLNIVAKDIQDDCDNVTRFLMLAREPIIPGTNRLFKTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRKHPLRA-----SGGLKYFDYLFYVDFEASMADEVAQNALRHLEEFATFLRVLGSYPVDTT 379          
BLAST of CF834508 vs. ExPASy Swiss-Prot
Match: PHEA_AQUAE (P-protein OS=Aquifex aeolicus GN=pheA PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 48/130 (36.92%), Postives = 68/130 (52.31%), Query Frame = -2
Query:  262 YGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAPDKGTSVLFKVLSAFAFRNISLTKIELRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYP 651
            Y + +L   IQD   N TRF+++A+  + P      KTSI+F        L+K L  F    I+LTKIE RP +               K ++Y+F++D E    E R + AL E++E T FL+VLGSYP
Sbjct:  243 YHLNILARNIQDSGDNFTRFLVIAKRDLKPTGSD--KTSILFGVKDEPGALYKALEVFYKHGINLTKIESRPSKK--------------KAWDYVFFVDLEGHKEEERVEKALKELKEKTQFLKVLGSYP 356          
BLAST of CF834508 vs. ExPASy Swiss-Prot
Match: PHEA_ENTAG (P-protein OS=Enterobacter agglomerans GN=pheA PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14
Identity = 49/143 (34.27%), Postives = 71/143 (49.65%), Query Frame = -2
Query:  232 ELYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAPDKGTSVLFKVLSAFAFRNISLTKIELRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMD-MTPWSPFR 657
            ELY +QVLE  + +   N TRF++LAR+ I      P KT+++ A  +    L   L      N+ ++K+E RP    P              +E MFYID + ++   R Q AL E+Q  T  L+VLG YP + + P  P R
Sbjct:  259 ELYQLQVLERNLANQQQNHTRFIVLARKAIEVSDQVPAKTTLIMATGQQAGALVDALLVLRQHNLIMSKLESRPINGNP--------------WEEMFYIDVQGNLQSERMQQALQELQTMTRSLKVLGCYPSENVVPAEPGR 387          
BLAST of CF834508 vs. ExPASy Swiss-Prot
Match: PHEA_HAEIN (P-protein OS=Haemophilus influenzae GN=pheA PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 40/135 (29.63%), Postives = 74/135 (54.81%), Query Frame = -2
Query:  253 ELYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAPDKGTSVLFKVLSAFAFRNISLTKIELRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 657
            +LYG+ VL+  I +  +N+TRF+++A+EP    +  P KT ++    +    L   L  F    I++TK+E RP   +P              +E MFY++ EA++     + AL E++ ++++L++LG YP ++
Sbjct:  259 KLYGLSVLKTNIANQENNITRFIVVAKEPREVSSQIPTKTLLLMTTSQQAGALVDALLVFKKHQINMTKLESRPIYGKP--------------WEEMFYLEIEANIHHPDTKQALEELKNYSNYLKILGCYPSEI 379          
BLAST of CF834508 vs. ExPASy Swiss-Prot
Match: PHEA_SHIFL (P-protein OS=Shigella flexneri GN=pheA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.444e-13
Identity = 45/133 (33.83%), Postives = 67/133 (50.38%), Query Frame = -2
Query:  256 LYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAPDKGTSVLFKVLSAFAFRNISLTKIELRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMD 654
            LYG+QVLE    +   N TRFV+LAR+ I      P KT+++ A  +    L + L      N+ +T++E RP    P              +E MFY+D +A++     Q AL E+ E T  ++VLG YP +
Sbjct:  260 LYGLQVLERIEANQRQNFTRFVVLARKAINVSDQVPAKTTLLMATGQQAGALVEALLVLRNHNLIMTRLESRPIHGNP--------------WEEMFYLDIQANLESAEMQKALKELGEITRSMKVLGCYPSE 378          
The following BLAST results are available for this feature:
BLAST of CF834508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
AROD6_ARATH1.153e-7184.28Arogenate dehydratase/prephenate dehydratase 6, ch... [more]
AROD3_ARATH1.079e-6983.02Arogenate dehydratase 3, chloroplastic OS=Arabidop... [more]
AROD5_ARATH1.905e-6677.58Arogenate dehydratase 5, chloroplastic OS=Arabidop... [more]
AROD4_ARATH1.365e-6478.13Arogenate dehydratase 4, chloroplastic OS=Arabidop... [more]
AROD1_ARATH1.677e-4663.43Arogenate dehydratase/prephenate dehydratase 1, ch... [more]
AROD2_ARATH3.386e-3955.19Arogenate dehydratase/prephenate dehydratase 2, ch... [more]
PHEA_AQUAE2.611e-1536.92P-protein OS=Aquifex aeolicus GN=pheA PE=4 SV=1[more]
PHEA_ENTAG2.887e-1434.27P-protein OS=Enterobacter agglomerans GN=pheA PE=4... [more]
PHEA_HAEIN4.924e-1429.63P-protein OS=Haemophilus influenzae GN=pheA PE=4 S... [more]
PHEA_SHIFL2.444e-1333.83P-protein OS=Shigella flexneri GN=pheA PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834508 ID=CF834508; Name=CF834508; organism=Citrus sinensis; type=EST; length=715bp
TTTTTTTTTTTTTTTTTCCCACCAAGAAATTGCCATTGATGACTCTTTAA
TAAAAATTACAAACAAATTCCGAGAAAAAGGGGGGGAAATTCTAATTAAT
TTTCCTCTTTTTTTTTTTTTTTCCTTTTCGTCTTCTTCTTCTTCTTTGGG
CAAATAATAAACATTCAATATTTTTTAATTTTTAATTTTTTTAAAATAAA
ATAGCTAATAATTTTATTGTCATTATTCTCCCCTAAACGGGCTCCATGGG
GTCATGTCCATAGGATAACTCCCCAACACCCTCAAAAACGACGTGAATTC
CTGGACCTCCGCCAGCGCATTCTGCGCCCTAACCTCAGCCATCGAGGCTT
CGAAATCAATGTAAAACATGTACTCGAAGTGCTTGGCCGTCCCCACATTC
GCATCGTCAACCAGCCTGATCGGGCGGTTCCGGTGCGGCCGCAACTCTAT
CTTCGTCAAACTTATGTTCCTGAACGCGAACGCCGACAACACCTTAAACA
ACACACTCGTCCCCTTGTCGGGCGCGAACACGATACTCGTCTTGAACGGC
CGATCCGTGCGCGGGATTATCGGCTCACGCGCCAACATCACGAACCGAGT
CACGTTACTCGAATCGTCCTGTATCCCATCCTCCAGGACTTGCATTCCGT
ACAATTCGGCGGCGCGTGCGGAGGCTATTGCCGCGGTGTCGCGGAGGTCA
TTGGCGGCGATGTAC
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