CF834523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ERC6L_HUMAN (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 6.227e-47 Identity = 97/181 (53.59%), Postives = 128/181 (70.72%), Query Frame = 2 Query: 2 YKFLLFDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFS 538 +K L DGT T +R K +N FQ+ +FLLT+QVGG+GLTLT A RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK L + T E K RYFS+Q+LREL ++ + S+TQ QL H Q D L+ HI +L +LGIAG+S H L+++ Sbjct: 501 FKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTI--EDLQNSVTQLQLQSLHAAQRKSDIKLDEHIAYLQSLGIAGISDHDLMYT 679
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ERC6L_BOVIN (DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L PE=2 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 6.227e-47 Identity = 96/182 (52.75%), Postives = 130/182 (71.43%), Query Frame = 2 Query: 2 YKFLLFDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 541 +K L DGT T +R K ++ FQ+ +FLLT+QVGG+GLTLT A RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK L + T + K RYFS+Q+LREL ++ + F S TQ QL H Q D++L+ HI FL +L IAG+S H L++++ Sbjct: 503 FKILRIDGTITHLVEREKRISLFQQNKDYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFTI--EDFQNSATQLQLQSLHAAQRRSDKNLDEHIAFLHSLRIAGISDHDLMYTR 682
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ERC6L_MOUSE (DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l PE=1 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 8.992e-46 Identity = 96/182 (52.75%), Postives = 126/182 (69.23%), Query Frame = 2 Query: 2 YKFLLFDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 541 +K L DGT T +R K + FQ+ +FLLT+QVGG+GLTLT A RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK L + T E K RYF++Q+L+EL ++ S TQ QL H Q DE L+ HI +L LGIAG+S H L+F++ Sbjct: 504 FKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFTKQELKELFTV--GDLQKSATQMQLQCLHAAQRRSDEKLDEHIAYLHLLGIAGISDHDLMFTR 683
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ERC6L_DANRE (DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 6.444e-44 Identity = 92/182 (50.55%), Postives = 127/182 (69.78%), Query Frame = 2 Query: 2 YKFLLFDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 541 ++ L DGT T+ ++R K ++ FQ IFLLT+QVGG+G+TLT A+RV++ DP+WNP+TD Q+VDRAYRIGQ ++V++YRL+TCGTVEEKIYR+Q+FK L + T + K RYFS+Q+LREL L + S TQQQL H D SL+ HI L ++ + G+S H L+F+K Sbjct: 516 FRLLRLDGTVTQLAEREKRISLFQTDKRYTIFLLTTQVGGVGITLTGANRVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFKL--EDTRSSSTQQQLQAMHAQSRRSDTSLDHHIARLHSMEMFGISDHDLMFTK 695
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RHP26_SCHPO (DNA repair protein rhp26 OS=Schizosaccharomyces pombe GN=rhp26 PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.790e-31 Identity = 66/122 (54.10%), Postives = 89/122 (72.95%), Query Frame = 2 Query: 20 DGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 385 DG+T + R +V++F + + +FLLT++VGGLG+ LT ADRVI+ DP WNPSTD Q+ +RA+R+GQKKDVVVYRLMT GT+EEKIY +QIFK L + +Q R+F DL +L +L Sbjct: 673 DGSTSIALRQDLVDNFNKNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRRFFKMTDLHDLFTL 794
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ERCC6_HUMAN (DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.067e-30 Identity = 65/128 (50.78%), Postives = 87/128 (67.97%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 385 Y +L DGTT + R ++ + E +FLLT++VGGLG+ LT A+RV++ DP WNPSTD Q+ +RA+RIGQKK V VYRL+T GT+EEKIY +QIFK L + +Q R+F DL EL +L Sbjct: 880 YTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTL 1007
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD26_YEAST (DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae GN=RAD26 PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 8.456e-28 Identity = 72/173 (41.62%), Postives = 107/173 (61.85%), Query Frame = 2 Query: 8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEE---HGDQHNMDESLEAHIQFLDTLGIAGVS 517 +L DGTT R +V+ F + +FLLT++VGGLG+ LT A+R+I+ DP WNPSTD Q+ +RA+RIGQK++V +YRLM G++EEKIY +QIFK L +Q R+F +L +L SL G + + ++L+EE H + +S E+ F + ++GVS Sbjct: 699 YLRMDGTTNIKGRQSLVDRFNN-ESFDVFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRILTDPKQKRFFKIHELHDLFSL---GGENGYSTEELNEEVQKHTENLKNSKSEESD-DFEQLVNLSGVS 866
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_COCIM (Putative DNA helicase INO80 OS=Coccidioides immitis GN=INO80 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.383e-22 Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301 YK+ DG+TK DR V+DFQ+ +FLL+++ GGLG+ LT AD VI D WNP+ D+Q++DRA+R+GQ K V VYRL+T GT+EE+I ++ + K Sbjct: 1421 YKYCRLDGSTKLEDRRDTVSDFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLITRGTIEERIRKRALQK 1520
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD54_SCHPO (DNA repair protein rhp54 OS=Schizosaccharomyces pombe GN=rhp54 PE=1 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 3.112e-22 Identity = 54/130 (41.54%), Postives = 82/130 (63.08%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI-RYFSQQDLRELLSL 385 YK L DGT + R ++V+ F + + A +FLL+S+ GG G+ L A+R+I+ DP WNP+ D Q++ R +R GQKKD VYR + GT+EEKI+++Q K L + + + R+FS +LR+L L Sbjct: 652 YKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQDVERHFSLDNLRQLFQL 781
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_SCLS1 (Putative DNA helicase INO80 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=INO80 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.112e-22 Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 2 Query: 2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301 YK+L DG+TK DR V+DFQ IFLL+++ GGLG+ LT AD VI D WNP+ D+Q++DRA+R+GQ + V VYR++T GT+EE+I ++ + K Sbjct: 1463 YKYLRLDGSTKLEDRRDTVHDFQTRPEIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRMITRGTIEERIRKRALQK 1562 The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 169
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bpback to top |