CF834543

Overview
NameCF834543
Unique NameCF834543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834543 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.884e-59
Identity = 116/133 (87.22%), Postives = 119/133 (89.47%), Query Frame = -3
Query:  168 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 566
            EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI+VVL              ACSIL
Sbjct:   65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKTKKKKSKAQKACSIL 197          
BLAST of CF834543 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.221e-58
Identity = 115/133 (86.47%), Postives = 118/133 (88.72%), Query Frame = -3
Query:  168 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 566
            EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF+DHPGAVPI+TAQGEELRKLI APAYIECSSK+QQNVKAVFDAAIRVVL              ACSIL
Sbjct:   65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197          
BLAST of CF834543 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.221e-58
Identity = 114/133 (85.71%), Postives = 118/133 (88.72%), Query Frame = -3
Query:  168 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 566
            EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+TAQGEEL+KLIGAPAYIECSSKTQ+NVK VFDAAIRVVL              ACSIL
Sbjct:   65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197          
BLAST of CF834543 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 2.721e-58
Identity = 114/133 (85.71%), Postives = 117/133 (87.97%), Query Frame = -3
Query:  168 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 566
            EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+TAQGEELRK IGAP YIECSSKTQ+NVKAVFDAAIRVVL              ACSIL
Sbjct:   65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197          
BLAST of CF834543 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 7.916e-58
Identity = 111/133 (83.46%), Postives = 117/133 (87.97%), Query Frame = -3
Query:  168 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 566
            EDYNRLRPLSYRGADVF+LAFSLISKASYENVSKKWIPEL+HYAPGVPIILVGTKLDLRDDKQFF+DHPGAVPISTAQGEELRKLIGA AYIECSSKTQQN+KAVFDAAI+VVL               C+IL
Sbjct:   65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVLQPPKQKKKKKKAQKGCAIL 197          
BLAST of CF834543 vs. ExPASy Swiss-Prot
Match: RAC6_ARATH (Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.034e-57
Identity = 112/133 (84.21%), Postives = 117/133 (87.97%), Query Frame = -3
Query:  168 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 566
            EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+T QGEEL+KLIGAPAYIECSSK+Q+NVK VFDAAIRVVL              ACSIL
Sbjct:   65 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQPPKQKKKKNKAQKACSIL 197          
BLAST of CF834543 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 6.702e-57
Identity = 110/133 (82.71%), Postives = 116/133 (87.22%), Query Frame = -3
Query:  168 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 566
            EDYNRLRPLSYRGADVFILAFSLISKASYEN++KKWIPEL+HYAPGVPIILVGTKLDLRDDK F  DHPGAVPI+TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI+VVL              +CSIL
Sbjct:   65 EDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKREAQKSCSIL 197          
BLAST of CF834543 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.143e-56
Identity = 105/114 (92.11%), Postives = 113/114 (99.12%), Query Frame = -3
Query:  225 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 566
            EDYNRLRPLSYRGADVF+LAFSL+SKASYENVSKKW+PEL+HYAPGVPIILVGTKLDLRDDKQFF +HPGAVPISTAQGEEL+KLIGAPAYIECS+KTQQNVKAVFDAAI+VVL
Sbjct:   65 EDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVL 178          
BLAST of CF834543 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.493e-56
Identity = 111/133 (83.46%), Postives = 115/133 (86.47%), Query Frame = -3
Query:  168 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 566
            EDYNRLRPLSYRGADVF+LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF+DHPGAVPI+TAQGEELRK IGAP YIECSSKTQ NVK VFDAAI+VVL              ACSIL
Sbjct:   65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQPPKAKKKKKAQRGACSIL 197          
BLAST of CF834543 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.326e-56
Identity = 106/114 (92.98%), Postives = 112/114 (98.25%), Query Frame = -3
Query:  225 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 566
            EDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI+T QGEEL+KLIG+P YIECSSKTQQNVKAVFDAAI+VVL
Sbjct:   65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178          
The following BLAST results are available for this feature:
BLAST of CF834543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RAC1_BETVU1.884e-5987.22Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RHO1_PEA1.221e-5886.47Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC1_ARATH1.221e-5885.71Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]
RAC11_ARATH2.721e-5885.71Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC5_ORYSJ7.916e-5883.46Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC6_ARATH1.034e-5784.21Rac-like GTP-binding protein ARAC6 OS=Arabidopsis ... [more]
RAC1_LOTJA6.702e-5782.71Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC3_ARATH1.143e-5692.11Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RAC6_ORYSJ1.493e-5683.46Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RAC5_ARATH3.326e-5692.98Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05L11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834543 ID=CF834543; Name=CF834543; organism=Citrus sinensis; type=EST; length=568bp
AGCCGATCACAACAATTCCAACAAAACAATACCCTTCCACCTGATGATTC
ACAGAGAGATCCTCACAGTTTGTCAATTGAGATTTCTTCCAGAGCAAAGG
AAGAAAGATGAGGGAGAATTTGAGAAAGGACAGAGGGTCATAATCTCTTT
ACACCTAATTTCAATCACAATATAGAGCAGGCCTTTTGTGCTTTATTCTT
TTTCTTCTTCGTCTTTGGTGGTTGGAGGACAACTCTGATGGCTGCATCAA
ATACTGCCTTCACATTCTGCTGTGTTTTTGAACTGCATTCAATGTAAGCA
GGTGCACCAATCAACTTCCTCAGCTCCTCCCCCTGAGCTGTACTAATGGG
CACGGCACCTGGATGATCAATGAAGAACTGCTTATCATCCCGAAGATCAA
GCTTTGTTCCAACAAGAATTATTGGCACACCAGGTGCATAATGTTTCAAC
TCTGGAATCCACTTCTTGGATACATTTTCATAACTTGCTTTGCTAATAAG
AGAGAATGCAAGAATGAAAACATCTGCACCACGGTAACTTAAAGGTCTTA
ATCTGTTATAATCCTCCC
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