CF834544

Overview
NameCF834544
Unique NameCF834544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3215 contig Csv1_Contig3215:250..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834544 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.724e-59
Identity = 115/134 (85.82%), Postives = 119/134 (88.81%), Query Frame = 1
Query:    1 REDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXXCSIL 402
            +EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI+VVL               CSIL
Sbjct:   64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKTKKKKSKAQKACSIL 197          
BLAST of CF834544 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.118e-58
Identity = 114/134 (85.07%), Postives = 118/134 (88.06%), Query Frame = 1
Query:    1 REDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXXCSIL 402
            +EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF+DHPGAVPI+TAQGEELRKLI APAYIECSSK+QQNVKAVFDAAIRVVL               CSIL
Sbjct:   64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197          
BLAST of CF834544 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.118e-58
Identity = 113/134 (84.33%), Postives = 118/134 (88.06%), Query Frame = 1
Query:    1 REDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXXCSIL 402
            +EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+TAQGEEL+KLIGAPAYIECSSKTQ+NVK VFDAAIRVVL               CSIL
Sbjct:   64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197          
BLAST of CF834544 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.490e-58
Identity = 113/134 (84.33%), Postives = 117/134 (87.31%), Query Frame = 1
Query:    1 REDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXXCSIL 402
            +EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+TAQGEELRK IGAP YIECSSKTQ+NVKAVFDAAIRVVL               CSIL
Sbjct:   64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197          
BLAST of CF834544 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 7.244e-58
Identity = 111/134 (82.84%), Postives = 118/134 (88.06%), Query Frame = 1
Query:    1 REDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXXCSIL 402
            +EDYNRLRPLSYRGADVF+LAFSLISKASYENVSKKWIPEL+HYAPGVPIILVGTKLDLRDDKQFF+DHPGAVPISTAQGEELRKLIGA AYIECSSKTQQN+KAVFDAAI+VVL               C+IL
Sbjct:   64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVLQPPKQKKKKKKAQKGCAIL 197          
BLAST of CF834544 vs. ExPASy Swiss-Prot
Match: RAC6_ARATH (Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 9.461e-58
Identity = 111/134 (82.84%), Postives = 117/134 (87.31%), Query Frame = 1
Query:    1 REDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXXCSIL 402
            +EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+T QGEEL+KLIGAPAYIECSSK+Q+NVK VFDAAIRVVL               CSIL
Sbjct:   64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQPPKQKKKKNKAQKACSIL 197          
BLAST of CF834544 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.133e-57
Identity = 110/134 (82.09%), Postives = 116/134 (86.57%), Query Frame = 1
Query:    1 REDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXXCSIL 402
            +EDYNRLRPLSYRGADVFILAFSLISKASYEN++KKWIPEL+HYAPGVPIILVGTKLDLRDDK F  DHPGAVPI+TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI+VVL               CSIL
Sbjct:   64 QEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKREAQKSCSIL 197          
BLAST of CF834544 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.046e-56
Identity = 105/115 (91.30%), Postives = 114/115 (99.13%), Query Frame = 1
Query:    1 REDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 345
            +EDYNRLRPLSYRGADVF+LAFSL+SKASYENVSKKW+PEL+HYAPGVPIILVGTKLDLRDDKQFF +HPGAVPISTAQGEEL+KLIGAPAYIECS+KTQQNVKAVFDAAI+VVL
Sbjct:   64 QEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVL 178          
BLAST of CF834544 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.366e-56
Identity = 110/134 (82.09%), Postives = 115/134 (85.82%), Query Frame = 1
Query:    1 REDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXXCSIL 402
            +EDYNRLRPLSYRGADVF+LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF+DHPGAVPI+TAQGEELRK IGAP YIECSSKTQ NVK VFDAAI+VVL               CSIL
Sbjct:   64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQPPKAKKKKKAQRGACSIL 197          
BLAST of CF834544 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.044e-56
Identity = 106/115 (92.17%), Postives = 113/115 (98.26%), Query Frame = 1
Query:    1 REDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 345
            +EDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI+T QGEEL+KLIG+P YIECSSKTQQNVKAVFDAAI+VVL
Sbjct:   64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178          
The following BLAST results are available for this feature:
BLAST of CF834544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RAC1_BETVU1.724e-5985.82Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RHO1_PEA1.118e-5885.07Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC1_ARATH1.118e-5884.33Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]
RAC11_ARATH2.490e-5884.33Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC5_ORYSJ7.244e-5882.84Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC6_ARATH9.461e-5882.84Rac-like GTP-binding protein ARAC6 OS=Arabidopsis ... [more]
RAC1_LOTJA6.133e-5782.09Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC3_ARATH1.046e-5691.30Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RAC6_ORYSJ1.366e-5682.09Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RAC5_ARATH3.044e-5692.17Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05L11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834544 ID=CF834544; Name=CF834544; organism=Citrus sinensis; type=EST; length=619bp
AGGGAGGATTATAACAGATTAAGACCTTTAAGTTACCGTGGTGCAGATGT
TTTCATTCTTGCATTCTCTCTTATTAGCAAAGCAAGTTATGAAAATGTAT
CCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGGTGTGCCAATA
ATTCTTGTTGGAACAAAGCTTGATCTTCGGGATGATAAGCAGTTCTTCAT
TGATCATCCAGGTGCCGTGCCCATTAGTACAGCTCAGGGGGAGGAGCTGA
GGAAGTTGATTGGTGCACCTGCTTACATTGAATGCAGTTCAAAAACACAG
CAGAATGTGAAGGCAGTATTTGATGCAGCCATCAGAGTTGTCCTCCAACC
ACCAAAGACGAAGAAGAAAAAGAATAAAGCACAAAAGGCCTGCTCTATAT
TGTGATTGAAATTAGGTGTAAAGAGATTATGACCCTCTGTCCTTTCTCAA
ATTCTCCCTCATCTTTCTTCCTTTGCTCTGGAAGAAATCTCAATTGACAA
ACTGTGAGGATCTCTCTGTGAATCATCAGGTGGTTTTGTATTGTTTTGTT
GGAATTGTTGTGATCGGCTCTAATTGTTGAAATGCATTACATTGTTGCAC
ACCAAAAAAAAAAAAAAAA
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