CF834550

Overview
NameCF834550
Unique NameCF834550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834550_ssr337 microsatellite CF834550_ssr337:337..348. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1647 contig Csv1_Contig1647:984..1587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834550 vs. ExPASy Swiss-Prot
Match: CALR1_ARATH (Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.992e-21
Identity = 43/49 (87.76%), Postives = 48/49 (97.96%), Query Frame = -1
Query:  461 DPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKH 607
            DP+LYV+P LKYVG+ELWQVKSG++FDNVLVSDDPEYAKKLAEETWGKH
Sbjct:  306 DPELYVFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEETWGKH 354          
BLAST of CF834550 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.463e-20
Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = -1
Query:  464 DPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGK 607
            DP+LYVYPNLKYVGIELWQVKSGT+FDN+L++D+PEYAK+LAEETWGK
Sbjct:  308 DPELYVYPNLKYVGIELWQVKSGTLFDNILITDEPEYAKQLAEETWGK 355          
BLAST of CF834550 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.463e-20
Identity = 42/49 (85.71%), Postives = 47/49 (95.92%), Query Frame = -1
Query:  461 DPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKH 607
            DPD+YV+P LKYVGIELWQVKSGTMFDNVL+ DDP+YAKKLAEETWGK+
Sbjct:  306 DPDIYVFPKLKYVGIELWQVKSGTMFDNVLICDDPDYAKKLAEETWGKN 354          
BLAST of CF834550 vs. ExPASy Swiss-Prot
Match: CALR_RICCO (Calreticulin OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.941e-20
Identity = 41/49 (83.67%), Postives = 48/49 (97.96%), Query Frame = -1
Query:  461 DPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKH 607
            DP++YVYPNLKYVGIELWQVKSGT+FDNVL+ +DPEYAK+LAEETWGK+
Sbjct:  304 DPEIYVYPNLKYVGIELWQVKSGTLFDNVLICNDPEYAKQLAEETWGKN 352          
BLAST of CF834550 vs. ExPASy Swiss-Prot
Match: CALR_BETVU (Calreticulin OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = -1
Query:  464 DPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGK 607
            DP+LYVYP L+YVG+ELWQVKSGT+FDNVLV DDPEYAK+LAEETWGK
Sbjct:  309 DPELYVYPKLRYVGVELWQVKSGTLFDNVLVCDDPEYAKQLAEETWGK 356          
BLAST of CF834550 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.099e-18
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = -1
Query:  464 DPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGK 607
            DPDLYV+P LKYVG+ELWQVKSGT+FDN+++ DDPEYAK +AEETWGK
Sbjct:  311 DPDLYVFPKLKYVGVELWQVKSGTLFDNIVICDDPEYAKAIAEETWGK 358          
BLAST of CF834550 vs. ExPASy Swiss-Prot
Match: CALR2_ARATH (Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-18
Identity = 38/48 (79.17%), Postives = 46/48 (95.83%), Query Frame = -1
Query:  464 DPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGK 607
            DP+LYV+P LKYVG+ELWQVKSG++FDNVL+ DDP+YAKKLA+ETWGK
Sbjct:  306 DPELYVFPKLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADETWGK 353          
BLAST of CF834550 vs. ExPASy Swiss-Prot
Match: CALR_ORYSJ (Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = -1
Query:  461 DPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKH 607
            DP +Y + +LKY+GIELWQVKSGT+FDN L++DDPE AK  AEETWGKH
Sbjct:  313 DPYIYAFDSLKYIGIELWQVKSGTLFDNFLITDDPELAKTFAEETWGKH 361          
BLAST of CF834550 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.486e-15
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = -1
Query:  461 DPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKH 607
            DP +Y + +LKY+GIELWQVKSGT+FDN++++DDP  AK  AEETWGKH
Sbjct:  309 DPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTFAEETWGKH 357          
BLAST of CF834550 vs. ExPASy Swiss-Prot
Match: CALR_CHLRE (Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.816e-13
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = -1
Query:  461 DPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKH 607
            D  LY + +LK+VG ELWQVKSG++FDN+LV+DD E AKK AE+TWGKH
Sbjct:  306 DDKLYNFKDLKFVGFELWQVKSGSIFDNILVTDDLEAAKKFAEDTWGKH 354          
The following BLAST results are available for this feature:
BLAST of CF834550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CALR1_ARATH8.992e-2187.76Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=... [more]
CALR_PRUAR4.463e-2085.42Calreticulin OS=Prunus armeniaca PE=2 SV=1[more]
CALR_BERST4.463e-2085.71Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]
CALR_RICCO9.941e-2083.67Calreticulin OS=Ricinus communis PE=2 SV=1[more]
CALR_BETVU2.215e-1985.42Calreticulin OS=Beta vulgaris PE=2 SV=1[more]
CALR_NICPL1.099e-1879.17Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ... [more]
CALR2_ARATH2.449e-1879.17Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=... [more]
CALR_ORYSJ5.106e-1671.43Calreticulin OS=Oryza sativa subsp. japonica GN=Os... [more]
CALR_MAIZE1.486e-1567.35Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]
CALR_CHLRE1.816e-1367.35Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05L15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834550 ID=CF834550; Name=CF834550; organism=Citrus sinensis; type=EST; length=607bp
CCCTCAATTTTTTTTTTTTTTTTATTCTAAATGTGTCCATAAAAGCCCAC
CATCCTTTAATCCTCTTTGTTCTAAAAGCTCAGATAGGTAAAATGCCTAT
TTAAGCAATGATCGGCCACACAAATTTTACATGCAGCCTTTCTTTCTACT
CTTCAGGTCACTTTCCTAAAGAATAAACGTCCCTAGAGCTGAAAATCAAA
ATAGAAAACAGAAAAATTTTGGAGCATCTTTACGCCCAAATTCTCGGGGC
TTATCATAGCATTTTCCCCTACAGCTCATCATGTACATCCTTGTCTGCGT
CTCCGCTGCTGGAGTCTGATTTGGTTTCAGCATCAGCATCATCATCATCT
TCAGTGTCATCGTCATCATTATCCTCAGCATCAGAATCAGGTGCGTCCTT
TGATTCCTCCTCCTCTCTCTTCTTCTCAGCCTCATCAAATGCTGCCTTCT
CGGCATCCTTATGCTTTCCCCATGTTTCTTCGGCCAACTTCTTGGCATAC
TCTGGATCATCACTAACCAAGACATTGTCAAACATGGTTCCAGATTTCAC
CTGCCACAACTCAATGCCAACATACTTCAAGTTGGGATACACATAAAGGT
CTGGGTC
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