CF834551

Overview
NameCF834551
Unique NameCF834551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834551_ssr260 microsatellite CF834551_ssr260:260..271. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1647 contig Csv1_Contig1647:983..1580. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834551 vs. ExPASy Swiss-Prot
Match: CALR1_ARATH (Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.128e-18
Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 2
Query:    2 DPDLYVYPNLKYVGIELRQVKSGTMFDNVLVSDDTEYAKKLAEETWGKH 148
            DP+LYV+P LKYVG+EL QVKSG++FDNVLVSDD EYAKKLAEETWGKH
Sbjct:  306 DPELYVFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEETWGKH 354          
BLAST of CF834551 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.552e-17
Identity = 39/48 (81.25%), Postives = 46/48 (95.83%), Query Frame = 2
Query:    2 DPDLYVYPNLKYVGIELRQVKSGTMFDNVLVSDDTEYAKKLAEETWGK 145
            DP+LYVYPNLKYVGIEL QVKSGT+FDN+L++D+ EYAK+LAEETWGK
Sbjct:  308 DPELYVYPNLKYVGIELWQVKSGTLFDNILITDEPEYAKQLAEETWGK 355          
BLAST of CF834551 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.552e-17
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 2
Query:    2 DPDLYVYPNLKYVGIELRQVKSGTMFDNVLVSDDTEYAKKLAEETWGKH 148
            DPD+YV+P LKYVGIEL QVKSGTMFDNVL+ DD +YAKKLAEETWGK+
Sbjct:  306 DPDIYVFPKLKYVGIELWQVKSGTMFDNVLICDDPDYAKKLAEETWGKN 354          
BLAST of CF834551 vs. ExPASy Swiss-Prot
Match: CALR_RICCO (Calreticulin OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.458e-17
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 2
Query:    2 DPDLYVYPNLKYVGIELRQVKSGTMFDNVLVSDDTEYAKKLAEETWGKH 148
            DP++YVYPNLKYVGIEL QVKSGT+FDNVL+ +D EYAK+LAEETWGK+
Sbjct:  304 DPEIYVYPNLKYVGIELWQVKSGTLFDNVLICNDPEYAKQLAEETWGKN 352          
BLAST of CF834551 vs. ExPASy Swiss-Prot
Match: CALR_BETVU (Calreticulin OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.704e-17
Identity = 39/48 (81.25%), Postives = 44/48 (91.67%), Query Frame = 2
Query:    2 DPDLYVYPNLKYVGIELRQVKSGTMFDNVLVSDDTEYAKKLAEETWGK 145
            DP+LYVYP L+YVG+EL QVKSGT+FDNVLV DD EYAK+LAEETWGK
Sbjct:  309 DPELYVYPKLRYVGVELWQVKSGTLFDNVLVCDDPEYAKQLAEETWGK 356          
BLAST of CF834551 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.823e-16
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    2 DPDLYVYPNLKYVGIELRQVKSGTMFDNVLVSDDTEYAKKLAEETWGK 145
            DPDLYV+P LKYVG+EL QVKSGT+FDN+++ DD EYAK +AEETWGK
Sbjct:  311 DPDLYVFPKLKYVGVELWQVKSGTLFDNIVICDDPEYAKAIAEETWGK 358          
BLAST of CF834551 vs. ExPASy Swiss-Prot
Match: CALR2_ARATH (Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 8.518e-16
Identity = 36/48 (75.00%), Postives = 44/48 (91.67%), Query Frame = 2
Query:    2 DPDLYVYPNLKYVGIELRQVKSGTMFDNVLVSDDTEYAKKLAEETWGK 145
            DP+LYV+P LKYVG+EL QVKSG++FDNVL+ DD +YAKKLA+ETWGK
Sbjct:  306 DPELYVFPKLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADETWGK 353          
BLAST of CF834551 vs. ExPASy Swiss-Prot
Match: CALR_ORYSJ (Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.776e-13
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 DPDLYVYPNLKYVGIELRQVKSGTMFDNVLVSDDTEYAKKLAEETWGKH 148
            DP +Y + +LKY+GIEL QVKSGT+FDN L++DD E AK  AEETWGKH
Sbjct:  313 DPYIYAFDSLKYIGIELWQVKSGTLFDNFLITDDPELAKTFAEETWGKH 361          
BLAST of CF834551 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.168e-13
Identity = 31/49 (63.27%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 DPDLYVYPNLKYVGIELRQVKSGTMFDNVLVSDDTEYAKKLAEETWGKH 148
            DP +Y + +LKY+GIEL QVKSGT+FDN++++DD   AK  AEETWGKH
Sbjct:  309 DPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTFAEETWGKH 357          
BLAST of CF834551 vs. ExPASy Swiss-Prot
Match: CALR_CHLRE (Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.375e-12
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 DPDLYVYPNLKYVGIELRQVKSGTMFDNVLVSDDTEYAKKLAEETWGKH 148
            D  LY + +LK+VG EL QVKSG++FDN+LV+DD E AKK AE+TWGKH
Sbjct:  306 DDKLYNFKDLKFVGFELWQVKSGSIFDNILVTDDLEAAKKFAEDTWGKH 354          
The following BLAST results are available for this feature:
BLAST of CF834551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CALR1_ARATH3.128e-1883.67Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=... [more]
CALR_PRUAR1.552e-1781.25Calreticulin OS=Prunus armeniaca PE=2 SV=1[more]
CALR_BERST1.552e-1781.63Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]
CALR_RICCO3.458e-1779.59Calreticulin OS=Ricinus communis PE=2 SV=1[more]
CALR_BETVU7.704e-1781.25Calreticulin OS=Beta vulgaris PE=2 SV=1[more]
CALR_NICPL3.823e-1675.00Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ... [more]
CALR2_ARATH8.518e-1675.00Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=... [more]
CALR_ORYSJ1.776e-1367.35Calreticulin OS=Oryza sativa subsp. japonica GN=Os... [more]
CALR_MAIZE5.168e-1363.27Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]
CALR_CHLRE4.375e-1265.31Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05L15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834551 ID=CF834551; Name=CF834551; organism=Citrus sinensis; type=EST; length=601bp
TGACCCAGACCTTTATGTGTATCCCAACTTGAAGTATGTTGGCATTGAGT
TGCGGCAGGTGAAATCTGGAACCATGTTTGACAATGTCTTGGTTAGTGAT
GATACAGAGTATGCCAAGAAGTTGGCCGAAGAAACATGGGGAAAGCATAA
GGATGCCGAGAAGGCAGCATTTGATGAGGCTGAGAAGAAGAGAGAGGAGG
AGGAATCAAAGGACGCACCTGATTCTGATGCTGAGGATAATGATGACGAT
GACACTGAAGATGATGATGATGCTGATGCTGAAACCAAATCATACTCCAG
CAGCGGAGACGCAGACAAGGATGTACATGATGAGCTGTAGGGGAAAATGC
TATGATAAGCCCCGAGAATTTGGGCGTAAAGATGCTCCAAAATTTTTCTG
TTTTCTATTTTGATTTTCAGCTCTAGGGACGTTTATTCTTTAGGAAAGTG
ACCTGAAGAGTAGAAAGAAAGGCTGCATGTAAAATTTGTGTGGCCGATCA
TTGCTTAAATCTCATTTTAACTATCTGAGCTTTTAGAACAAAGAGGATTG
AAATATTGTGGGCTTTTATGGACACATTTATGAATAAAAAAAAAAAAAAA
A
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