CF834552

Overview
NameCF834552
Unique NameCF834552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6956 contig Csv1_Contig6956:1055..1882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834552 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 4.076e-77
Identity = 137/191 (71.73%), Postives = 160/191 (83.77%), Query Frame = -2
Query:  256 FPKGALLTWEEKKVPFKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPKVN 828
            F + ALLT EEK + +K HLIN+SDKPQWFL+ISP+GKVPV+K DDKWV DSDVIV I+EEKYP+P L  P EFASVGS IF +F  FLKSKD NDG+E ALL EL+AL+ HLK+H GPFIAGE+V+AVDLSLAPKLYHLQVAL HFK W+VPES  HVH Y K LF+L+SF+KTK E++YVI+GW PKVN
Sbjct:   22 FSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVISGWAPKVN 212          
BLAST of CF834552 vs. ExPASy Swiss-Prot
Match: CLIC1_HUMAN (Chloride intracellular channel protein 1 OS=Homo sapiens GN=CLIC1 PE=1 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 1.208e-12
Identity = 50/187 (26.74%), Postives = 89/187 (47.59%), Query Frame = -2
Query:  304 KKVPFKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 795
            K V F    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:   37 KGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of CF834552 vs. ExPASy Swiss-Prot
Match: CLIC1_RAT (Chloride intracellular channel protein 1 OS=Rattus norvegicus GN=Clic1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 50/187 (26.74%), Postives = 88/187 (47.06%), Query Frame = -2
Query:  304 KKVPFKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 795
            K V F    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:   37 KGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of CF834552 vs. ExPASy Swiss-Prot
Match: CLIC1_MOUSE (Chloride intracellular channel protein 1 OS=Mus musculus GN=Clic1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 50/187 (26.74%), Postives = 88/187 (47.06%), Query Frame = -2
Query:  304 KKVPFKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 795
            K V F    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y    +A E F  T
Sbjct:   37 KGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAMLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of CF834552 vs. ExPASy Swiss-Prot
Match: CLIC1_BOVIN (Chloride intracellular channel protein 1 OS=Bos taurus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 48/187 (25.67%), Postives = 89/187 (47.59%), Query Frame = -2
Query:  304 KKVPFKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 795
            K V F    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +++P+    VH Y +  +A E F  T
Sbjct:   37 KGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPDEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFSIPDVFRGVHRYLRNAYAREEFAST 222          
BLAST of CF834552 vs. ExPASy Swiss-Prot
Match: CLIC1_RABIT (Chloride intracellular channel protein 1 OS=Oryctolagus cuniculus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.278e-11
Identity = 50/187 (26.74%), Postives = 87/187 (46.52%), Query Frame = -2
Query:  304 KKVPFKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 795
            K V F    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  +  + +T+PE    VH Y    +A E F  T
Sbjct:   37 KGVTFNVTTVDTKRRTETVHKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGVDIFAKFSAYIKNSNPALNDNLEKGLLKALKILDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKNRGFTIPEVFRGVHRYLSNAYAREEFAST 222          
The following BLAST results are available for this feature:
BLAST of CF834552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DHAR1_ARATH4.076e-7771.73Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
CLIC1_HUMAN1.208e-1226.74Chloride intracellular channel protein 1 OS=Homo s... [more]
CLIC1_RAT2.061e-1226.74Chloride intracellular channel protein 1 OS=Rattus... [more]
CLIC1_MOUSE2.061e-1226.74Chloride intracellular channel protein 1 OS=Mus mu... [more]
CLIC1_BOVIN1.023e-1125.67Chloride intracellular channel protein 1 OS=Bos ta... [more]
CLIC1_RABIT2.278e-1126.74Chloride intracellular channel protein 1 OS=Orycto... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05L17_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05L17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834552 ID=CF834552; Name=CF834552; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTGACAAAATCCAATGGATTTAAACCATTTAATCCCT
GTAGGAGATATCCAGGAACTAAGAGTAAATACCATTCCACCAGGAGGTTT
CATTATAACAAATAGCAAATATCATCGTAGCCACCTTTATTGGATGATAC
AAACCCCCAGTGAACATTCTAATTATGCTCCAAGTCTCACACATACATTA
CTCGCATTTCATTAGCTAGATTTCAAACACCGCATAGCTTAGAACTAGTT
CATGCATTGACCTTCGGCACCCATCCTGCAATCACGTATTGCTTTTCAGC
CTTAGTCTTCTGAAAGGATTCCAGAGCAAAAAGCTTCTTCGTGTACCCAT
GGACATGAGCCAAGCTCTCAGGGACAGTCCACTGCTTGAAATGTTCAAGA
GCTACCTGAAGGTGGTACAGCTTTGGTGCCAAGCTCAAATCTACAGCAGT
GACCTTCTCTCCAGCAATGAATGGACCTCCATGAGTCTTAAGATGCTCAT
CCAATGCTTTCAATTCCTCCAGCAAAGCTTGCTCTGTCCCATCATTTGGG
TCCTTGCTCTTCAAGAAATTGACAAAAGATGGGAATATCTTTGATCCAAC
AGAGGCAAATTCAGGAGGATTAGTAAGAGAAGGCTCAGGATACTTCTCCT
CAATAATTCTAACAATCACATCAGAGTCAGCCACCCACTTGTCATCAAAC
TTTACCACAGGTACTTTCCCTTCTGGGCTTATCTCCAAAAACCATTGAGG
CTTGTCACTGATATTGATGAGGTGACGCTTGAATGGAACTTTCTTTTCCT
CCCAAGTAAGCAAAGCTCCTTTGGGAAAATGG
back to top