CF834554

Overview
NameCF834554
Unique NameCF834554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834554 vs. ExPASy Swiss-Prot
Match: ISAM1_ARATH (Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.224e-16
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = -3 
Query:  399 KGVKILIDPKVFMPVIGAKMDFVDDKLRSGLVFINPNFKGQCGCGESFM 545
            KGV+IL++PK  M VIG KMDFVDDKLRS  VFINPN +GQCGCGESFM
Sbjct:   77 KGVRILVEPKALMHVIGTKMDFVDDKLRSEFVFINPNSQGQCGCGESFM 125
[Close]
BLAST of CF834554 vs. ExPASy Swiss-Prot
Match: ISAM3_ARATH (Iron-sulfur assembly protein IscA-like 3, mitochondrial OS=Arabidopsis thaliana GN=At2g36260 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 9.222e-13
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = -3 
Query:  402 KGVKILIDPKVFMPVIGAKMDFVDDKLRSGLVFINPNFKGQCGCGESF 545
            KGVKIL+DPK  M VIG +MDFVDDKLRS  VF+NPN   +CGCGESF
Sbjct:   60 KGVKILVDPKAVMHVIGTEMDFVDDKLRSEFVFVNPN-ATKCGCGESF 106
[Close]
BLAST of CF834554 vs. ExPASy Swiss-Prot
Match: ISA1_YEAST (Iron sulfur assembly protein 1 OS=Saccharomyces cerevisiae GN=ISA1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.020e-11
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = -3 
Query:  399 GVKILIDPKVFMPVIGAKMDFVDDKLRSGLVFINPNFKGQCGCGESFM 542
            GVKI+ID K    +IG++MD++DDKL S  VF NPN KG CGCGESFM
Sbjct:  202 GVKIVIDSKALFSIIGSEMDWIDDKLASKFVFKNPNSKGTCGCGESFM 249
The following BLAST results are available for this feature:
BLAST of CF834554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ISAM1_ARATH5.224e-1677.55Iron-sulfur assembly protein IscA-like 1, mitochon... [more]
ISAM3_ARATH9.222e-1372.92Iron-sulfur assembly protein IscA-like 3, mitochon... [more]
ISA1_YEAST1.020e-1164.58Iron sulfur assembly protein 1 OS=Saccharomyces ce... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05L18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834554 ID=CF834554; Name=CF834554; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTGAGGGCCTTAAATCCTTTATTATTTAATTATTT
ATTTAGCCATTTCCTAACTGAACCCAATTACAATAAAAATCCCATAATCC
GGGTACAAAGGGATTTTTGTCAAAACCAGGAAAAAAAATGCTACAATAGT
TTTACCAATTTGTTTGTAAACGGCAAAACAGCAATGATTCCCAGGACGTG
AATTAATAAAGCCCCTGGTGCTCCAACTGCCATTAAAGCTCACCGAGGAT
GTCTACCTTTCATTCACAACCTTCAAACAAAGGCGTAATGCTTGGCCCGC
CAGGGAAAAAAATCATCCACGTTCATTCTTCATGGACTATTAGTTTGGAA
AAATCCCTAGCTTCCACCCTGCTTAAACCCTCCACTACTGGTGGGTGGCA
TAAAGGATTCCCCACAACCACACTGGCCTTTAAAGTTTGGATTAATGAAT
ACCAACCCCGACCTGAGCTTATCATCTACAAAATCCATTTTGGCCCCAAT
AACGGGCATGAAAACTTTTGGATCAATCAGTATCTTCACACCCTTAT
back to top