CF834556

Overview
NameCF834556
Unique NameCF834556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4770 contig Csv1_Contig4770:722..1422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834556 vs. ExPASy Swiss-Prot
Match: TRABD_BOVIN (TraB domain-containing protein OS=Bos taurus GN=TRABD PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 56/172 (32.56%), Postives = 87/172 (50.58%), Query Frame = -3
Query:  232 KVILGDRPVQITLRRTWEKMPLWHKIKLLYSFPFQAFLLRSAEDLIRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVAPE---------------HSSVVAVVGKGHLQGIKKYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIIS-GIY 699
            K  LGDRP+ +T +R    + LW K+KL +   F +  + S +D+ R  ++    D+L  ++ EM   FP L  T+V ERD Y++  L + A                  S VV VVG GH+ GI+K W   + + ++MT+P P    SA   +S L V  A + ++  G+Y
Sbjct:  185 KFHLGDRPIPVTFKRAIAALSLWQKVKLAWGLCFLSDPI-SKDDVERCKQK----DLLEQMMAEMVGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWTTDLNIQEIMTVPPP----SASGRVSRLAVKAAALGLLGYGLY 347          
BLAST of CF834556 vs. ExPASy Swiss-Prot
Match: TRABD_MOUSE (TraB domain-containing protein OS=Mus musculus GN=Trabd PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 47/144 (32.64%), Postives = 73/144 (50.69%), Query Frame = -3
Query:  313 KVILGDRPVQITLRRTWEKMPLWHKIKLLYSFPFQAFLLRSAEDLIRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVAPE---------------HSSVVAVVGKGHLQGIKKYWKQPVPVHDLMTIPSP 699
            K  LGDRP+ +T +R    +  W K+KL +   F +  + S +D+ R  ++    D+L  ++ EM   FP L  T+V ERD Y++  L + A                  S VV VVG GH+ GI+K W   + + ++MT+P P
Sbjct:  184 KFHLGDRPIPVTFKRAIAALSFWQKVKLAWGLCFLSDPI-SKDDVERCKQK----DLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPPP 322          
BLAST of CF834556 vs. ExPASy Swiss-Prot
Match: TRABD_HUMAN (TraB domain-containing protein OS=Homo sapiens GN=TRABD PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = -3
Query:  313 KVILGDRPVQITLRRTWEKMPLWHKIKLLYSFPFQAFLLRSAEDLIRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVAPE---------------HSSVVAVVGKGHLQGIKKYWKQPVPVHDLMTIPSP 699
            K  LGDRP+ +T +R    +  W K++L +   F +  + S +D+ R  ++    D+L  ++ EM   FP L  T+V ERD Y++  L + A                  S VV VVG GH+ GI+K W   + + ++MT+P P
Sbjct:  185 KFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLSDPI-SKDDVERCKQK----DLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPPP 323          
BLAST of CF834556 vs. ExPASy Swiss-Prot
Match: Y1365_METJA (Uncharacterized protein MJ1365 OS=Methanocaldococcus jannaschii GN=MJ1365 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 53/167 (31.74%), Postives = 91/167 (54.49%), Query Frame = -3
Query:  223 VILGDRPVQITLRRTWEKMPLWHKIKLLYSFPFQAFLLRSAEDLIRMLKEMDDVDMLTLVIQEMSKAF-------PTLMETLVHERDQYMSSTLLKVAPEHSSVVAVVGKGHLQGIKKYWKQPVPVH--DLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYIKC 696
            + L DR + ITL R  ++M    K+K+ +       LL S E+ +    E+DD D+L  +++   K         PT+ E LV ERD++M+  L +++   +S+VAVVG GH++GI +Y K+    +  DLM +   K    +LK L + G+++  ++I   +Y+ C
Sbjct:  120 IYLIDRDIDITLSRLMDRMTFKEKMKIFWE------LLNSDEEDL----ELDD-DLLNDMVKNPEKFIKLLKEISPTIYEVLVDERDRFMAKRLFELSKNKNSLVAVVGAGHVEGIVRYLKKLENGNDIDLMELIKVKKRKKSLKKLLTYGISLTIISIF--LYMIC 273          
The following BLAST results are available for this feature:
BLAST of CF834556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TRABD_BOVIN1.259e-1432.56TraB domain-containing protein OS=Bos taurus GN=TR... [more]
TRABD_MOUSE3.102e-1332.64TraB domain-containing protein OS=Mus musculus GN=... [more]
TRABD_HUMAN6.910e-1331.94TraB domain-containing protein OS=Homo sapiens GN=... [more]
Y1365_METJA4.479e-1231.74Uncharacterized protein MJ1365 OS=Methanocaldococc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05L19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834556 ID=CF834556; Name=CF834556; organism=Citrus sinensis; type=EST; length=701bp
TTTTTTTTTTTTTTTTTAATTGAAACAAACATTTTCATAGAAATACCTTT
TAAATGATGAACTAAACGAGAAAAATTAAATACATGTGCTGTTTTGTCTT
TCAAGGCATAGTTATGATCCTCTTGCTGTATAGCTGCTTTCAAATTTTGA
AAAGTTGAGTTTGGGTTAAAAGAACTCTCTTGTTTGAATTGATCACGGAG
AAAATCGGGCAAATTACTTTTTGCACTTAATATAGATGCCCGAAATGATG
GCAACCCCGGCAACAGCAACTCCTAAAGAAGAGAGAACTTTTAAAGCAGA
AACTGCTGGCTTTGGGGATGGAATTGTCATAAGATCATGTACCGGAACAG
GTTGCTTCCAATACTTCTTAATTCCTTGTAGGTGCCCCTTCCCAACAACT
GCGACAACTGAACTGTGCTCGGGAGCTACTTTTAGCAAAGTGGATGACAT
GTACTGATCTCGCTCATGCACAAGAGTTTCCATTAGAGTGGGAAAAGCTT
TGCTCATCTCTTGAATTACAAGAGTCAGCATATCAACATCATCCATTTCC
TTCAGCATTCTGATAAGATCCTCGGCACTACGCAATAAGAATGCTTGAAA
CGGGAAGGAGTAAAGTAATTTTATCTTATGCCAAAGCGGCATCTTTTCCC
ATGTCCTCCGTAATGTAATCTGCACAGGACGATCTCCAAGTATCACCTTG
C
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