CF834556
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834556 vs. ExPASy Swiss-Prot
Match: TRABD_BOVIN (TraB domain-containing protein OS=Bos taurus GN=TRABD PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14 Identity = 56/172 (32.56%), Postives = 87/172 (50.58%), Query Frame = -3 Query: 232 KVILGDRPVQITLRRTWEKMPLWHKIKLLYSFPFQAFLLRSAEDLIRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVAPE---------------HSSVVAVVGKGHLQGIKKYWKQPVPVHDLMTIPSPKPAVSALKVLSSLGVAVAGVAIIS-GIY 699 K LGDRP+ +T +R + LW K+KL + F + + S +D+ R ++ D+L ++ EM FP L T+V ERD Y++ L + A S VV VVG GH+ GI+K W + + ++MT+P P SA +S L V A + ++ G+Y Sbjct: 185 KFHLGDRPIPVTFKRAIAALSLWQKVKLAWGLCFLSDPI-SKDDVERCKQK----DLLEQMMAEMVGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWTTDLNIQEIMTVPPP----SASGRVSRLAVKAAALGLLGYGLY 347
BLAST of CF834556 vs. ExPASy Swiss-Prot
Match: TRABD_MOUSE (TraB domain-containing protein OS=Mus musculus GN=Trabd PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13 Identity = 47/144 (32.64%), Postives = 73/144 (50.69%), Query Frame = -3 Query: 313 KVILGDRPVQITLRRTWEKMPLWHKIKLLYSFPFQAFLLRSAEDLIRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVAPE---------------HSSVVAVVGKGHLQGIKKYWKQPVPVHDLMTIPSP 699 K LGDRP+ +T +R + W K+KL + F + + S +D+ R ++ D+L ++ EM FP L T+V ERD Y++ L + A S VV VVG GH+ GI+K W + + ++MT+P P Sbjct: 184 KFHLGDRPIPVTFKRAIAALSFWQKVKLAWGLCFLSDPI-SKDDVERCKQK----DLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPPP 322
BLAST of CF834556 vs. ExPASy Swiss-Prot
Match: TRABD_HUMAN (TraB domain-containing protein OS=Homo sapiens GN=TRABD PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13 Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = -3 Query: 313 KVILGDRPVQITLRRTWEKMPLWHKIKLLYSFPFQAFLLRSAEDLIRMLKEMDDVDMLTLVIQEMSKAFPTLMETLVHERDQYMSSTLLKVAPE---------------HSSVVAVVGKGHLQGIKKYWKQPVPVHDLMTIPSP 699 K LGDRP+ +T +R + W K++L + F + + S +D+ R ++ D+L ++ EM FP L T+V ERD Y++ L + A S VV VVG GH+ GI+K W + + ++MT+P P Sbjct: 185 KFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLSDPI-SKDDVERCKQK----DLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPPP 323
BLAST of CF834556 vs. ExPASy Swiss-Prot
Match: Y1365_METJA (Uncharacterized protein MJ1365 OS=Methanocaldococcus jannaschii GN=MJ1365 PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12 Identity = 53/167 (31.74%), Postives = 91/167 (54.49%), Query Frame = -3 Query: 223 VILGDRPVQITLRRTWEKMPLWHKIKLLYSFPFQAFLLRSAEDLIRMLKEMDDVDMLTLVIQEMSKAF-------PTLMETLVHERDQYMSSTLLKVAPEHSSVVAVVGKGHLQGIKKYWKQPVPVH--DLMTIPSPKPAVSALKVLSSLGVAVAGVAIISGIYIKC 696 + L DR + ITL R ++M K+K+ + LL S E+ + E+DD D+L +++ K PT+ E LV ERD++M+ L +++ +S+VAVVG GH++GI +Y K+ + DLM + K +LK L + G+++ ++I +Y+ C Sbjct: 120 IYLIDRDIDITLSRLMDRMTFKEKMKIFWE------LLNSDEEDL----ELDD-DLLNDMVKNPEKFIKLLKEISPTIYEVLVDERDRFMAKRLFELSKNKNSLVAVVGAGHVEGIVRYLKKLENGNDIDLMELIKVKKRKKSLKKLLTYGISLTIISIF--LYMIC 273 The following BLAST results are available for this feature:
BLAST of CF834556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF834556 ID=CF834556; Name=CF834556; organism=Citrus sinensis; type=EST; length=701bpback to top |