CF834570
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 4.996e-15 Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = -3 Query: 214 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPGV 363 M+GCTD+ QV+KEVGE +KEYP++F+ +IG N RQVQCISFI AKPPGV Sbjct: 131 MFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.422e-14 Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = -3 Query: 217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363 M+GCTDA QVL EV EV+KEYP ++V IIG N RQVQC+SFIA KPPG Sbjct: 119 MFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.231e-13 Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = -3 Query: 217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363 M+GCTDA QV KEV E +KEYPH+F+ IIG N RQVQCISFIA KP G Sbjct: 131 MFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13 Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = -3 Query: 217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363 M+GCTDA QV+ EV EV+KEYP ++V IIG N RQVQC+SFIA KPPG Sbjct: 58 MFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.099e-13 Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = -3 Query: 217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363 MYGCTD QVL EV E +K YP +F+ IIG NKRQVQC+SFIA KPPG Sbjct: 131 MYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.741e-13 Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = -3 Query: 217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363 M+GCTDA QVL EV EV+KEYP ++V +IG N RQVQC+SFIA +PPG Sbjct: 120 MFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 3.580e-13 Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = -3 Query: 217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363 M+GCTDA QVL EV EV+KEYP ++V +IG N RQVQC+SFIA +PPG Sbjct: 119 MFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.676e-13 Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = -3 Query: 220 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPP 363 ++GCTD+ QVLKEV E +KEYP++F+ IIG N RQVQCISFIA KPP Sbjct: 30 LFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 6.107e-13 Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = -3 Query: 220 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPP 363 ++GCTD+ QVLKEV E +KEYP++F+ IIG N RQVQCISFIA KPP Sbjct: 129 LFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 1.361e-12 Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = -3 Query: 220 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPP 363 ++GCTD+ QVLKEV E +KEYP +F+ IIG N RQVQCISFIA KPP Sbjct: 129 LFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176 The following BLAST results are available for this feature:
BLAST of CF834570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834570 ID=CF834570; Name=CF834570; organism=Citrus sinensis; type=EST; length=365bpback to top |