CF834570

Overview
NameCF834570
Unique NameCF834570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:444..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.996e-15
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = -3
Query:  214 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPGV 363
            M+GCTD+ QV+KEVGE +KEYP++F+ +IG  N RQVQCISFI AKPPGV
Sbjct:  131 MFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.422e-14
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            M+GCTDA QVL EV EV+KEYP ++V IIG  N RQVQC+SFIA KPPG
Sbjct:  119 MFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.231e-13
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            M+GCTDA QV KEV E +KEYPH+F+ IIG  N RQVQCISFIA KP G
Sbjct:  131 MFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            M+GCTDA QV+ EV EV+KEYP ++V IIG  N RQVQC+SFIA KPPG
Sbjct:   58 MFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.099e-13
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            MYGCTD  QVL EV E +K YP +F+ IIG  NKRQVQC+SFIA KPPG
Sbjct:  131 MYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.741e-13
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            M+GCTDA QVL EV EV+KEYP ++V +IG  N RQVQC+SFIA +PPG
Sbjct:  120 MFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.580e-13
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = -3
Query:  217 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPPG 363
            M+GCTDA QVL EV EV+KEYP ++V +IG  N RQVQC+SFIA +PPG
Sbjct:  119 MFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.676e-13
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = -3
Query:  220 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPP 363
            ++GCTD+ QVLKEV E +KEYP++F+ IIG  N RQVQCISFIA KPP
Sbjct:   30 LFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.107e-13
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = -3
Query:  220 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPP 363
            ++GCTD+ QVLKEV E +KEYP++F+ IIG  N RQVQCISFIA KPP
Sbjct:  129 LFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of CF834570 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.361e-12
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = -3
Query:  220 MYGCTDAPQVLKEVGEVQKEYPHSFVGIIGLVNKRQVQCISFIAAKPP 363
            ++GCTD+ QVLKEV E +KEYP +F+ IIG  N RQVQCISFIA KPP
Sbjct:  129 LFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of CF834570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RBS_LACSA4.996e-1570.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HORVU9.422e-1471.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MUSAC1.231e-1371.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT1.607e-1369.39Ribulose bisphosphate carboxylase small chain clon... [more]
RBS3_AMAHP2.099e-1369.39Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_WHEAT2.741e-1367.35Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS1_WHEAT3.580e-1367.35Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS_SINAL4.676e-1368.75Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS1A_ARATH6.107e-1368.75Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS3B_ARATH1.361e-1268.75Ribulose bisphosphate carboxylase small chain 3B, ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05M04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834570 ID=CF834570; Name=CF834570; organism=Citrus sinensis; type=EST; length=365bp
AAGGATTCAATTATTAAAATATATATAAAAAAAAAAAAAAGAACCCTTTG
TTCGGGGAGAAAACCAAAAAAGTTTGAGCAGCAGCAACATGATCCTAATT
ACAAATTAACCGCGAACCGAACCCCCATTGATCGAATGATCATTATGGGG
GTTACACATAATAATAATCAACAATATTGCCTGGGGGGTTACCCAAATTT
AATTGGGAACCCATACGCCTGGTGGCTTGGCAGCAATGAAACTGATGCAC
TGCACTTGACGCTTGTTGACCAATCCGATAATTCCGACGAATGAATGTGG
GTATTCCTTCTGGACCTCCCCAACCTCCTTCAAAACCTGGGGTGCATCTG
TGCACCCATACATGG
back to top