CF834577

Overview
NameCF834577
Unique NameCF834577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834577 vs. ExPASy Swiss-Prot
Match: XYLT1_RAT (Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.757e-13
Identity = 52/181 (28.73%), Postives = 94/181 (51.93%), Query Frame = 2 
Query:   23 ILLKVDKGWNPFIALRALDYPLVTRDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNDVMLPQEVYFHSVICNAPEFKNTTINSDLRYMIWDNPPKMEPHFLNVSDY 565
            +L   D  W+ FI L A DYP+ T D L  AF S  RD+NF+      G   ++ I+   +D  L+L   + +++  ++R  P+   V            GS WF+L+R F+E+  F  D+L   +  +++  +LP E +FH+V+ N+P   +T ++++LR   W+     +  + ++ D+
Sbjct:  273 LLEMTDWPWDFFINLSAADYPIRTNDQLV-AFLSRYRDMNFL---KSHGRDNARFIRKQDLDR-LFLECDTHMWRLGDRR-IPEGIAVD----------GGSDWFLLNRKFVEYVAFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHC-DTMVDNNLRITNWNRKLGCKCQYKHIVDW 436
[Close]
BLAST of CF834577 vs. ExPASy Swiss-Prot
Match: XYLT1_MOUSE (Xylosyltransferase 1 OS=Mus musculus GN=Xylt1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.013e-12
Identity = 52/181 (28.73%), Postives = 94/181 (51.93%), Query Frame = 2 
Query:   23 ILLKVDKGWNPFIALRALDYPLVTRDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNDVMLPQEVYFHSVICNAPEFKNTTINSDLRYMIWDNPPKMEPHFLNVSDY 565
            +L   D  W+ FI L A DYP+ T D L  AF S  RD+NF+      G   ++ I+   +D  L+L   + +++  ++R  P+   V            GS WF+L+R F+E+  F  D+L   +  +++  +LP E +FH+V+ N+P   +T ++++LR   W+     +  + ++ D+
Sbjct:  402 LLEMTDWPWDFFINLSAADYPIRTNDQLV-AFLSRYRDMNFL---KSHGRDNARFIRKQGLDR-LFLECDTHMWRLGDRR-IPEGIAVD----------GGSDWFLLNRKFVEYVAFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHC-DTMVDNNLRITNWNRKLGCKCQYKHIVDW 565
[Close]
BLAST of CF834577 vs. ExPASy Swiss-Prot
Match: XYLT1_CANFA (Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.013e-12
Identity = 52/181 (28.73%), Postives = 94/181 (51.93%), Query Frame = 2 
Query:   23 ILLKVDKGWNPFIALRALDYPLVTRDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNDVMLPQEVYFHSVICNAPEFKNTTINSDLRYMIWDNPPKMEPHFLNVSDY 565
            +L   D  W+ FI L A DYP+ T D L  AF S  RD+NF+      G   ++ I+   +D  L+L   + +++  ++R  P+   V            GS WF+L+R F+E+  F  D+L   +  +++  +LP E +FH+V+ N+P   +T ++++LR   W+     +  + ++ D+
Sbjct:  397 LLEMTDWPWDFFINLSAADYPIRTNDQLV-AFLSRYRDMNFL---KSHGRDNARFIRKQGLDR-LFLECDAHMWRLGDRR-IPEGIAVD----------GGSDWFLLNRKFVEYVTFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHC-DTMVDNNLRITNWNRKLGCKCQYKHIVDW 560
[Close]
BLAST of CF834577 vs. ExPASy Swiss-Prot
Match: XYLT1_PANTR (Xylosyltransferase 1 OS=Pan troglodytes GN=XYLT1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.323e-12
Identity = 52/181 (28.73%), Postives = 94/181 (51.93%), Query Frame = 2 
Query:   23 ILLKVDKGWNPFIALRALDYPLVTRDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNDVMLPQEVYFHSVICNAPEFKNTTINSDLRYMIWDNPPKMEPHFLNVSDY 565
            +L   D  W+ FI L A DYP+ T D L  AF S  RD+NF+      G   ++ I+   +D  L+L   + +++  ++R  P+   V            GS WF+L+R F+E+  F  D+L   +  +++  +LP E +FH+V+ N+P   +T ++++LR   W+     +  + ++ D+
Sbjct:  394 LLEMTDWPWDFFINLSAADYPIRTNDQLV-AFLSRYRDMNFL---KSHGRDNARFIRKQGLDR-LFLECDAHMWRLGDRR-IPEGIAVD----------GGSDWFLLNRRFVEYVTFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHC-DTMVDNNLRITNWNRKLGCKCQYKHIVDW 557
[Close]
BLAST of CF834577 vs. ExPASy Swiss-Prot
Match: XYLT1_HUMAN (Xylosyltransferase 1 OS=Homo sapiens GN=XYLT1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.323e-12
Identity = 52/181 (28.73%), Postives = 94/181 (51.93%), Query Frame = 2 
Query:   23 ILLKVDKGWNPFIALRALDYPLVTRDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNDVMLPQEVYFHSVICNAPEFKNTTINSDLRYMIWDNPPKMEPHFLNVSDY 565
            +L   D  W+ FI L A DYP+ T D L  AF S  RD+NF+      G   ++ I+   +D  L+L   + +++  ++R  P+   V            GS WF+L+R F+E+  F  D+L   +  +++  +LP E +FH+V+ N+P   +T ++++LR   W+     +  + ++ D+
Sbjct:  408 LLEMTDWPWDFFINLSAADYPIRTNDQLV-AFLSRYRDMNFL---KSHGRDNARFIRKQGLDR-LFLECDAHMWRLGDRR-IPEGIAVD----------GGSDWFLLNRRFVEYVTFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHC-DTMVDNNLRITNWNRKLGCKCQYKHIVDW 571
The following BLAST results are available for this feature:
BLAST of CF834577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
XYLT1_RAT7.757e-1328.73Xylosyltransferase 1 (Fragment) OS=Rattus norvegic... [more]
XYLT1_MOUSE1.013e-1228.73Xylosyltransferase 1 OS=Mus musculus GN=Xylt1 PE=2... [more]
XYLT1_CANFA1.013e-1228.73Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 ... [more]
XYLT1_PANTR1.323e-1228.73Xylosyltransferase 1 OS=Pan troglodytes GN=XYLT1 P... [more]
XYLT1_HUMAN1.323e-1228.73Xylosyltransferase 1 OS=Homo sapiens GN=XYLT1 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05M09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834577 ID=CF834577; Name=CF834577; organism=Citrus sinensis; type=EST; length=566bp
TGCAGTTTTGCCCTTAGATGCTATTCTGTTGAAGGTTGATAAAGGGTGGA
ATCCTTTCATTGCCTTAAGGGCTTTGGATTATCCGCTTGTTACTCGAGAT
GATCTTGCCCATGCGTTTTCTTCTGTTAGGAGAGATCTCAATTTCATTGA
TCACACCAGTGACCTTGGATGGAAAGAATCTCAAAGGATCCAACCTGTTA
TAGTTGACCCAGGGCTTTACTTAGCGAGGAAGAGCCAAATTTTTCAAGCT
ACAGAGAAGCGACCAACGCCTGATGCTTTTAAAGTATTCACAGGTCGCAC
TGAAAGGGGTTCTTGCATTGCAGGTTCACAGTGGTTTGTCTTAAGTCGAT
CTTTCCTAGAATTTTGTGTTTTTGGATGGGATAACCTACCTCGCACCCTG
CTTATGTATTTCAACGATGTAATGTTACCTCAAGAAGTGTATTTCCACTC
TGTCATTTGCAACGCACCGGAGTTTAAGAACACAACCATAAACAGTGATT
TGAGATATATGATATGGGACAATCCTCCAAAAATGGAACCTCACTTTCTC
AATGTTTCTGATTATG
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