CF834578

Overview
NameCF834578
Unique NameCF834578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834578 vs. ExPASy Swiss-Prot
Match: XYLT1_RAT (Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 53/181 (29.28%), Postives = 96/181 (53.04%), Query Frame = 2
Query:   23 ILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNNVMLPQEVYFHSVICNAPEFKNTTINSDLRYMIWDNPPKMEPHFLNVSDY 565
            +L   D  W++FI LSA DYP+ T D L  AF S  RD+NF+      G   ++ I+   +D  L+L   + +++  ++R  P+   V            GS WF+L+R F+E+  F  D+L   +  +++  +LP E +FH+V+ N+P   +T ++++LR   W+     +  + ++ D+
Sbjct:  273 LLEMTDWPWDFFINLSAADYPIRTNDQLV-AFLSRYRDMNFL---KSHGRDNARFIRKQDLDR-LFLECDTHMWRLGDRR-IPEGIAVD----------GGSDWFLLNRKFVEYVAFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHC-DTMVDNNLRITNWNRKLGCKCQYKHIVDW 436          
BLAST of CF834578 vs. ExPASy Swiss-Prot
Match: XYLT1_MOUSE (Xylosyltransferase 1 OS=Mus musculus GN=Xylt1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 53/181 (29.28%), Postives = 96/181 (53.04%), Query Frame = 2
Query:   23 ILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNNVMLPQEVYFHSVICNAPEFKNTTINSDLRYMIWDNPPKMEPHFLNVSDY 565
            +L   D  W++FI LSA DYP+ T D L  AF S  RD+NF+      G   ++ I+   +D  L+L   + +++  ++R  P+   V            GS WF+L+R F+E+  F  D+L   +  +++  +LP E +FH+V+ N+P   +T ++++LR   W+     +  + ++ D+
Sbjct:  402 LLEMTDWPWDFFINLSAADYPIRTNDQLV-AFLSRYRDMNFL---KSHGRDNARFIRKQGLDR-LFLECDTHMWRLGDRR-IPEGIAVD----------GGSDWFLLNRKFVEYVAFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHC-DTMVDNNLRITNWNRKLGCKCQYKHIVDW 565          
BLAST of CF834578 vs. ExPASy Swiss-Prot
Match: XYLT1_CANFA (Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 53/181 (29.28%), Postives = 96/181 (53.04%), Query Frame = 2
Query:   23 ILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNNVMLPQEVYFHSVICNAPEFKNTTINSDLRYMIWDNPPKMEPHFLNVSDY 565
            +L   D  W++FI LSA DYP+ T D L  AF S  RD+NF+      G   ++ I+   +D  L+L   + +++  ++R  P+   V            GS WF+L+R F+E+  F  D+L   +  +++  +LP E +FH+V+ N+P   +T ++++LR   W+     +  + ++ D+
Sbjct:  397 LLEMTDWPWDFFINLSAADYPIRTNDQLV-AFLSRYRDMNFL---KSHGRDNARFIRKQGLDR-LFLECDAHMWRLGDRR-IPEGIAVD----------GGSDWFLLNRKFVEYVTFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHC-DTMVDNNLRITNWNRKLGCKCQYKHIVDW 560          
BLAST of CF834578 vs. ExPASy Swiss-Prot
Match: XYLT1_PANTR (Xylosyltransferase 1 OS=Pan troglodytes GN=XYLT1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.168e-13
Identity = 53/181 (29.28%), Postives = 96/181 (53.04%), Query Frame = 2
Query:   23 ILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNNVMLPQEVYFHSVICNAPEFKNTTINSDLRYMIWDNPPKMEPHFLNVSDY 565
            +L   D  W++FI LSA DYP+ T D L  AF S  RD+NF+      G   ++ I+   +D  L+L   + +++  ++R  P+   V            GS WF+L+R F+E+  F  D+L   +  +++  +LP E +FH+V+ N+P   +T ++++LR   W+     +  + ++ D+
Sbjct:  394 LLEMTDWPWDFFINLSAADYPIRTNDQLV-AFLSRYRDMNFL---KSHGRDNARFIRKQGLDR-LFLECDAHMWRLGDRR-IPEGIAVD----------GGSDWFLLNRRFVEYVTFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHC-DTMVDNNLRITNWNRKLGCKCQYKHIVDW 557          
BLAST of CF834578 vs. ExPASy Swiss-Prot
Match: XYLT1_HUMAN (Xylosyltransferase 1 OS=Homo sapiens GN=XYLT1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.168e-13
Identity = 53/181 (29.28%), Postives = 96/181 (53.04%), Query Frame = 2
Query:   23 ILLKVDKGWNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNNVMLPQEVYFHSVICNAPEFKNTTINSDLRYMIWDNPPKMEPHFLNVSDY 565
            +L   D  W++FI LSA DYP+ T D L  AF S  RD+NF+      G   ++ I+   +D  L+L   + +++  ++R  P+   V            GS WF+L+R F+E+  F  D+L   +  +++  +LP E +FH+V+ N+P   +T ++++LR   W+     +  + ++ D+
Sbjct:  408 LLEMTDWPWDFFINLSAADYPIRTNDQLV-AFLSRYRDMNFL---KSHGRDNARFIRKQGLDR-LFLECDAHMWRLGDRR-IPEGIAVD----------GGSDWFLLNRRFVEYVTFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHC-DTMVDNNLRITNWNRKLGCKCQYKHIVDW 571          
BLAST of CF834578 vs. ExPASy Swiss-Prot
Match: XYLT2_RAT (Xylosyltransferase 2 OS=Rattus norvegicus GN=Xylt2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12
Identity = 56/176 (31.82%), Postives = 89/176 (50.57%), Query Frame = 2
Query:   44 GWNW--FIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNNVMLPQEVYFHSVICNAPEFKNTTINSDLRYMIWDNPPKMEPHFLNVSDY 565
            GW W  FI LSA DYP  T ++L  AF S  RD NF+      G   S+ I+   +D  L+    S +++  E R  P    V            GS WFVL+RSF+E+ V+  D L   L  ++   +LP E +FH+V+ N+P  + + ++++LR   W+     +  + ++ D+
Sbjct:  319 GWTWDFFINLSATDYPTRTNEELV-AFLSKNRDKNFL---KSHGRDNSRFIKKQGLD-RLFHECDSHMWRLGE-RQIPAGIVV----------DGGSDWFVLTRSFVEYVVYTEDPLVAQLRQFYTYTLLPAESFFHTVLENSPACE-SLVDNNLRVTNWNRKLGCKCQYKHIVDW 477          
BLAST of CF834578 vs. ExPASy Swiss-Prot
Match: XYLT2_MOUSE (Xylosyltransferase 2 OS=Mus musculus GN=Xylt2 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 56/176 (31.82%), Postives = 88/176 (50.00%), Query Frame = 2
Query:   44 GWNW--FIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNNVMLPQEVYFHSVICNAPEFKNTTINSDLRYMIWDNPPKMEPHFLNVSDY 565
            GW W  FI LSA DYP  T ++L  AF S  RD NF+      G   S+ I+   +D  L+    S +++  E R  P    V            GS WFVL+RSF+E+ V+  D L   L  ++   +LP E +FH+V+ N+P    + ++++LR   W+     +  + ++ D+
Sbjct:  319 GWTWDFFINLSATDYPTRTNEELV-AFLSKNRDKNFL---KSHGRDNSRFIKKQGLD-RLFHECDSHMWRLGE-RQIPAGIVV----------DGGSDWFVLTRSFVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTVLENSPACA-SLVDNNLRVTNWNRKLGCKCQYKHIVDW 477          
BLAST of CF834578 vs. ExPASy Swiss-Prot
Match: XYLT2_CANFA (Xylosyltransferase 2 OS=Canis familiaris GN=XYLT2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 54/173 (31.21%), Postives = 89/173 (51.45%), Query Frame = 2
Query:   47 WNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNNVMLPQEVYFHSVICNAPEFKNTTINSDLRYMIWDNPPKMEPHFLNVSDY 565
            W++FI LSA DYP  T ++L  AF S  RD NF+      G   S+ I+   +D  L+    S +++  E R  P    V            GS WFVL+RSF+E+ V+  D L   L  ++   +LP E +FH+V+ N+P  + + ++++LR   W+     +  + ++ D+
Sbjct:  322 WDFFINLSATDYPTRTNEELV-AFLSKNRDKNFL---KSHGRDNSRFIKKQGLD-RLFHECDSHMWRLGE-RQIPAGIVV----------DGGSDWFVLTRSFVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTVLENSPACE-SLVDNNLRVTNWNRRLGCKCQYKHIVDW 477          
BLAST of CF834578 vs. ExPASy Swiss-Prot
Match: XYLT2_PANTR (Xylosyltransferase 2 OS=Pan troglodytes GN=XYLT2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 54/173 (31.21%), Postives = 88/173 (50.87%), Query Frame = 2
Query:   47 WNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNNVMLPQEVYFHSVICNAPEFKNTTINSDLRYMIWDNPPKMEPHFLNVSDY 565
            W++FI LSA DYP  T ++L  AF S  RD NF+      G   S+ I+   +D  L+    S +++  E R  P    V            GS WFVL+RSF+E+ V+  D L   L  ++   +LP E +FH+V+ N+   + T ++++LR   W+     +  + ++ D+
Sbjct:  322 WDFFINLSATDYPTRTNEELV-AFLSKNRDKNFL---KSHGRDNSRFIKKQGLD-RLFHECDSHMWRLGE-RQIPAGIVV----------DGGSDWFVLTRSFVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTVLENSLACE-TLVDNNLRVTNWNRKLGCKCQYKHIVDW 477          
BLAST of CF834578 vs. ExPASy Swiss-Prot
Match: XYLT2_HUMAN (Xylosyltransferase 2 OS=Homo sapiens GN=XYLT2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 54/173 (31.21%), Postives = 88/173 (50.87%), Query Frame = 2
Query:   47 WNWFIALSALDYPLVTQDDLAHAFSSVRRDLNFIDHTSDLGWKESQRIQPVIVDPGLYLARKSQIFQATEKRPTPDAFKVFTGRTERGSCIAGSQWFVLSRSFLEFCVFGWDNLPRTLLMYFNNVMLPQEVYFHSVICNAPEFKNTTINSDLRYMIWDNPPKMEPHFLNVSDY 565
            W++FI LSA DYP  T ++L  AF S  RD NF+      G   S+ I+   +D  L+    S +++  E R  P    V            GS WFVL+RSF+E+ V+  D L   L  ++   +LP E +FH+V+ N+   + T ++++LR   W+     +  + ++ D+
Sbjct:  322 WDFFINLSATDYPTRTNEELV-AFLSKNRDKNFL---KSHGRDNSRFIKKQGLD-RLFHECDSHMWRLGE-RQIPAGIVV----------DGGSDWFVLTRSFVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTVLENSLACE-TLVDNNLRVTNWNRKLGCKCQYKHIVDW 477          
The following BLAST results are available for this feature:
BLAST of CF834578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
XYLT1_RAT6.846e-1429.28Xylosyltransferase 1 (Fragment) OS=Rattus norvegic... [more]
XYLT1_MOUSE8.941e-1429.28Xylosyltransferase 1 OS=Mus musculus GN=Xylt1 PE=2... [more]
XYLT1_CANFA8.941e-1429.28Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 ... [more]
XYLT1_PANTR1.168e-1329.28Xylosyltransferase 1 OS=Pan troglodytes GN=XYLT1 P... [more]
XYLT1_HUMAN1.168e-1329.28Xylosyltransferase 1 OS=Homo sapiens GN=XYLT1 PE=1... [more]
XYLT2_RAT4.906e-1231.82Xylosyltransferase 2 OS=Rattus norvegicus GN=Xylt2... [more]
XYLT2_MOUSE1.093e-1131.82Xylosyltransferase 2 OS=Mus musculus GN=Xylt2 PE=2... [more]
XYLT2_CANFA1.427e-1131.21Xylosyltransferase 2 OS=Canis familiaris GN=XYLT2 ... [more]
XYLT2_PANTR5.424e-1131.21Xylosyltransferase 2 OS=Pan troglodytes GN=XYLT2 P... [more]
XYLT2_HUMAN5.424e-1131.21Xylosyltransferase 2 OS=Homo sapiens GN=XYLT2 PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05M10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834578 ID=CF834578; Name=CF834578; organism=Citrus sinensis; type=EST; length=741bp
TGCAGTTTTGCCTGTTGCTGCTATTCTGTTGAAGGTTGATAAAGGGTGGA
ATTGGTTCATTGCCTTAAGTGCTTTGGATTATCCGCTTGTTACTCAAGAT
GATCTTGCCCATGCGTTTTCTTCTGTTAGGAGAGATCTCAATTTCATTGA
TCACACCAGTGACCTTGGATGGAAAGAATCTCAAAGGATCCAGCCTGTTA
TAGTTGACCCAGGGCTTTACTTAGCGAGGAAGAGCCAAATTTTTCAAGCT
ACAGAGAAGCGACCAACGCCTGATGCTTTTAAAGTATTCACAGGTCGCAC
TGAAAGGGGTTCTTGCATTGCAGGTTCACAGTGGTTTGTCTTAAGTCGAT
CTTTCCTAGAATTTTGTGTTTTTGGATGGGATAACCTACCTCGCACCCTG
CTTATGTATTTCAACAATGTAATGTTACCTCAAGAAGTGTATTTCCACTC
TGTCATTTGCAACGCACCGGAGTTTAAGAACACAACCATAAACAGTGATT
TGAGATATATGATATGGGACAATCCTCCAAAAATGGAACCTCACTTTCTC
AATGTTTCTGATTATGATCAAATGGTTCAAAGTGGAGTTGTCTTTGCCAG
ACAATTTCAGAAGGATGATCCTGCGCTGAACATGATTGATGAAAAGATCC
TCAAGCGTGGACATAATCGAGCTGCTCCGGGGGCGTGGTGCACTGGGCAA
AGGAGTTGGTGGATGGATCCTTGCCCCCAATGGGGTGATGT
back to top