CF834579

Overview
NameCF834579
Unique NameCF834579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834579 vs. ExPASy Swiss-Prot
Match: CSN7_ARATH (COP9 signalosome complex subunit 7 OS=Arabidopsis thaliana GN=CSN7 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.876e-46
Identity = 91/139 (65.47%), Postives = 111/139 (79.86%), Query Frame = -3
Query:  375 PQVVPDQAVKLKQLSVFTLAEMNKVLSYDQLLKELEVVNVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFVAGRDLRHGQLVNMMQSLSNWLDTSDNVLSVIQDKIKWAETMCEEGKKLKMEVKSHLQDVKKSVHSK 791
            P + PDQ +KLKQL+V TLAE NKVL YD L+ EL+V NVRELEDFLINECMY GIV+GKL+QL+RCFEV F AGRDLR GQL NM+ +LSNWL+TS+N+L  IQDKIKWA+ M E  KK + E +  +++VKKS+  K
Sbjct:   85 PHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGNMLHTLSNWLNTSENLLISIQDKIKWADNMSEMDKKHRKEAEEGVEEVKKSLSMK 223          
BLAST of CF834579 vs. ExPASy Swiss-Prot
Match: CSN7_DICDI (COP9 signalosome complex subunit 7 OS=Dictyostelium discoideum GN=csn7 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.770e-18
Identity = 49/133 (36.84%), Postives = 79/133 (59.40%), Query Frame = -3
Query:  393 PQVVPDQAVKLKQLSVFTLAEMNKVLSYDQLLKELEVVNVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFVAGRDLRHGQLVNMMQSLSNWLDTSDNVLSVIQDKIKWAETMCEEGKKLKMEVKSHLQDVK 791
            PQ+ P    KLKQL++  L+  + V+ Y  L +++E+ NVRELED +I+  +Y  I+KGKL+Q  +  E+ F  GRD++  QL +M+  L+NW  TS  +L  I   I  ++ +  + +K K E +S  +  K
Sbjct:   88 PQLTPQMITKLKQLTIVFLSSTSNVIPYSVLQEQIEITNVRELEDLIIDS-IYQNIIKGKLDQKNKHLEIDFSIGRDVQPEQLDSMINCLNNWSSTSQKLLDDISGLITHSDKVHLQYRKEKEEFESKFEIAK 219          
BLAST of CF834579 vs. ExPASy Swiss-Prot
Match: CSN7B_HUMAN (COP9 signalosome complex subunit 7b OS=Homo sapiens GN=COPS7B PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.770e-18
Identity = 48/136 (35.29%), Postives = 83/136 (61.03%), Query Frame = -3
Query:  384 PQVVPDQAVKLKQLSVFTLAEMNKVLSYDQLLKELEVVNVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFVAGRDLRHGQLVNMMQSLSNWLDTSDNVLSVIQDKIKWAETMCEEGKKLKMEVKSHLQDVKKSV 791
            P++   Q  KLK L++ +LA   K + Y  LLK+LE+ N+RELED +I E +Y  I++GKL+Q  +  EV F  GRD+R   + N++++L  W D  + VL  I+ ++  A    E   + + +V++ + ++KK++
Sbjct:   86 PELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLII-EAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHNRTQQQVEAEVTNIKKTL 220          
BLAST of CF834579 vs. ExPASy Swiss-Prot
Match: CSN7B_BOVIN (COP9 signalosome complex subunit 7b OS=Bos taurus GN=COPS7B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.770e-18
Identity = 48/136 (35.29%), Postives = 83/136 (61.03%), Query Frame = -3
Query:  384 PQVVPDQAVKLKQLSVFTLAEMNKVLSYDQLLKELEVVNVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFVAGRDLRHGQLVNMMQSLSNWLDTSDNVLSVIQDKIKWAETMCEEGKKLKMEVKSHLQDVKKSV 791
            P++   Q  KLK L++ +LA   K + Y  LLK+LE+ N+RELED +I E +Y  I++GKL+Q  +  EV F  GRD+R   + N++++L  W D  + VL  I+ ++  A    E   + + +V++ + ++KK++
Sbjct:   86 PELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLII-EAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHSRTQQQVEAEVTNIKKTL 220          
BLAST of CF834579 vs. ExPASy Swiss-Prot
Match: CSN7B_MOUSE (COP9 signalosome complex subunit 7b OS=Mus musculus GN=Cops7b PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18
Identity = 48/136 (35.29%), Postives = 83/136 (61.03%), Query Frame = -3
Query:  384 PQVVPDQAVKLKQLSVFTLAEMNKVLSYDQLLKELEVVNVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFVAGRDLRHGQLVNMMQSLSNWLDTSDNVLSVIQDKIKWAETMCEEGKKLKMEVKSHLQDVKKSV 791
            P++   Q  KLK L++ +LA   K + Y  LLK+LE+ N+RELED +I E +Y  I++GKL+Q  +  EV F  GRD+R   + N++++L  W D  + VL  I+ ++  A    E   + + +V++ + ++KK++
Sbjct:   86 PELSVAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLII-EAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHHRTQQQVEAEVSNIKKTL 220          
BLAST of CF834579 vs. ExPASy Swiss-Prot
Match: CSN7_DROME (COP9 signalosome complex subunit 7 OS=Drosophila melanogaster GN=CSN7 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.081e-15
Identity = 52/144 (36.11%), Postives = 85/144 (59.03%), Query Frame = -3
Query:  369 FPQVVPDQAVKLKQLSVFTLAEMNKVLSYDQLLKELEVVNVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFVAGRDLRHGQLVNMMQSLSNWLDTSDNVLSVIQDKIKWAETMCEEGKKL--KMEVKSHLQDVKKSVHSKVN 794
            F ++ P    KL+ L++ +LA   K + Y  LL ELE+ NVR LED +I E +Y  I+ GKL Q  R  EV +  GRD+  G    ++++L  W+++ D+V + I+ +IK+A    E+ K+L  K  V+  L ++KK + S+ +
Sbjct:   93 FIELTPAMQKKLQHLTIVSLAIKAKSIPYALLLSELEIDNVRHLEDIII-EAIYADIIHGKLFQNTRILEVDYAQGRDIPPGYTGQIVETLQAWVNSCDSVSNCIEMQIKYAN--AEKSKRLINKERVEQDLINLKKVLKSQTS 233          
BLAST of CF834579 vs. ExPASy Swiss-Prot
Match: CSN7A_MOUSE (COP9 signalosome complex subunit 7a OS=Mus musculus GN=Cops7a PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 47/138 (34.06%), Postives = 80/138 (57.97%), Query Frame = -3
Query:  384 HFPQVVPDQAVKLKQLSVFTLAEMNKVLSYDQLLKELEVVNVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFVAGRDLRHGQLVNMMQSLSNWLDTSDNVLSVIQDKIKWAETMCEEGKKLKMEVKSHLQDVKKSV 797
            + P +   Q  KL+ LSV TLA   K + Y  LL+ L + NVR+LED +I E +Y  +++G L+Q  +  EV +  GRD++   L  + Q+L  W    + VLS I++++  A    E+   LK +++S + ++KK++
Sbjct:   84 NLPPLTDAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVI-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIAQTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTI 220          
BLAST of CF834579 vs. ExPASy Swiss-Prot
Match: CSN7A_PONAB (COP9 signalosome complex subunit 7a OS=Pongo abelii GN=COPS7A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.561e-14
Identity = 46/138 (33.33%), Postives = 80/138 (57.97%), Query Frame = -3
Query:  384 HFPQVVPDQAVKLKQLSVFTLAEMNKVLSYDQLLKELEVVNVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFVAGRDLRHGQLVNMMQSLSNWLDTSDNVLSVIQDKIKWAETMCEEGKKLKMEVKSHLQDVKKSV 797
            + P +   Q  KL+ LSV TLA   K + Y  LL+ L + NVR+LED +I E +Y  +++G L+Q  +  EV +  GRD++   L  + ++L  W    + VLS I++++  A    E+   LK +++S + ++KK++
Sbjct:   84 NLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVI-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTI 220          
BLAST of CF834579 vs. ExPASy Swiss-Prot
Match: CSN7A_HUMAN (COP9 signalosome complex subunit 7a OS=Homo sapiens GN=COPS7A PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.561e-14
Identity = 46/138 (33.33%), Postives = 80/138 (57.97%), Query Frame = -3
Query:  384 HFPQVVPDQAVKLKQLSVFTLAEMNKVLSYDQLLKELEVVNVRELEDFLINECMYVGIVKGKLNQLRRCFEVQFVAGRDLRHGQLVNMMQSLSNWLDTSDNVLSVIQDKIKWAETMCEEGKKLKMEVKSHLQDVKKSV 797
            + P +   Q  KL+ LSV TLA   K + Y  LL+ L + NVR+LED +I E +Y  +++G L+Q  +  EV +  GRD++   L  + ++L  W    + VLS I++++  A    E+   LK +++S + ++KK++
Sbjct:   84 NLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVI-EAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTI 220          
The following BLAST results are available for this feature:
BLAST of CF834579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CSN7_ARATH5.876e-4665.47COP9 signalosome complex subunit 7 OS=Arabidopsis ... [more]
CSN7_DICDI6.770e-1836.84COP9 signalosome complex subunit 7 OS=Dictyosteliu... [more]
CSN7B_HUMAN6.770e-1835.29COP9 signalosome complex subunit 7b OS=Homo sapien... [more]
CSN7B_BOVIN6.770e-1835.29COP9 signalosome complex subunit 7b OS=Bos taurus ... [more]
CSN7B_MOUSE8.843e-1835.29COP9 signalosome complex subunit 7b OS=Mus musculu... [more]
CSN7_DROME1.081e-1536.11COP9 signalosome complex subunit 7 OS=Drosophila m... [more]
CSN7A_MOUSE5.365e-1534.06COP9 signalosome complex subunit 7a OS=Mus musculu... [more]
CSN7A_PONAB1.561e-1433.33COP9 signalosome complex subunit 7a OS=Pongo abeli... [more]
CSN7A_HUMAN1.561e-1433.33COP9 signalosome complex subunit 7a OS=Homo sapien... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05M11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834579 ID=CF834579; Name=CF834579; organism=Citrus sinensis; type=EST; length=799bp
TTTTTTTTTTTTTTTTCAAGATAAGGCGCTTTTTCATGTTTGACCATTTA
ATAACATCATGATCGTATGATAGAACACAAGCGCCATGACTGTAGAATAA
AACGTACACCAAATCATAAAAAATGCTCAAACCTCTAAAATGGATCATCT
ATTTTAATCCTACTATGGAGAGTTATTAATTCAGACCATTGCAAGTATGT
TAAATGCCAAAACTAACCCCCTACACAATAAGGACAATTTCTGCAATCAA
CATTACCACTGTATGAACACCCCCCCAAAACAAAAAAAAAAAATCCTAAA
TTCTTATCACTAACTCAAAACCATATAAGCCTACTTACAAACAAACTTCA
GAGGAAAGGACTGAATCAATTGACCTTTGAATGGACAGATTTCTTCACAT
CTTGCAAGTGACTTTTGACTTCCATCTTGAGTTTTTTGCCCTCTTCGCAC
ATTGTTTCAGCCCACTTAATCTTGTCTTGAATCACGGAAAGAACATTGTC
TGAAGTGTCCAACCAATTACTTAAGCTCTGCATCATGTTCACAAGTTGGC
CGTGTCTCAAATCCCTCCCTGCAACAAATTGCACCTCAAAGCATCTTCTC
AACTGATTTAACTTCCCTTTGACTATCCCCACATACATGCATTCATTGAT
AAGGAAGTCTTCAAGTTCACGCACATTAACAACCTCAAGTTCCTTCAGAA
GTTGATCATAGGAGAGAACCTTGTTCATCTCAGCAAGAGTAAACACACTG
AGTTGTTTAAGCTTGACTGCTTGATCGGGCACCACCTGTGGAAAATGAG
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