CF834582

Overview
NameCF834582
Unique NameCF834582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4690 contig Csv1_Contig4690:10..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834582 vs. ExPASy Swiss-Prot
Match: RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.503e-55
Identity = 107/114 (93.86%), Postives = 110/114 (96.49%), Query Frame = 2
Query:   41 YRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNMRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVRKVLKIQKAKEKLASKS 382
            YR RHSYATKSNQHRVVKTPGGKL+YQSTKKRASGPKCPVTGKRIQGIPHLRP EYKRSRLSRN RTVNRAYGGVLSG AVRERIIRAFLVEEQKIV+KVLKIQKAKEKLA+KS
Sbjct:    7 YRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120          
BLAST of CF834582 vs. ExPASy Swiss-Prot
Match: RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.661e-54
Identity = 105/114 (92.11%), Postives = 109/114 (95.61%), Query Frame = 2
Query:   41 YRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNMRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVRKVLKIQKAKEKLASKS 382
            YR RHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP EYKRSRLSRN RTVNRAYGGVLSGGAVRERIIRAFLVEEQKIV+KVLKIQK KEK A+K+
Sbjct:    7 YRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120          
BLAST of CF834582 vs. ExPASy Swiss-Prot
Match: RL341_ARATH (60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.170e-54
Identity = 103/114 (90.35%), Postives = 111/114 (97.37%), Query Frame = 2
Query:   41 YRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNMRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVRKVLKIQKAKEKLASKS 382
            YR+RHSYATKSNQHR+VKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP+EYKRSRLSRN RTVNRAYGGVLSG AVRERIIRAFLVEEQKIV+KVLK+QKAKEK+A K+
Sbjct:    7 YRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120          
BLAST of CF834582 vs. ExPASy Swiss-Prot
Match: RL342_ARATH (60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.077e-53
Identity = 102/113 (90.27%), Postives = 108/113 (95.58%), Query Frame = 2
Query:   41 YRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNMRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVRKVLKIQKAKEKLASK 379
            YR+RHSYATKSNQHR+VKTPGGKL YQ+TKKRASGPKCPVTGKRIQGIPHLRP EYKRSRLSRN RTVNRAYGGVLSG AVRERIIRAFLVEEQKIV+KVLK+QKAKEK+A K
Sbjct:    7 YRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119          
BLAST of CF834582 vs. ExPASy Swiss-Prot
Match: RL343_ARATH (60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 6.980e-53
Identity = 101/114 (88.60%), Postives = 108/114 (94.74%), Query Frame = 2
Query:   41 YRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNMRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVRKVLKIQKAKEKLASKS 382
            YR+RHSYATKSNQHR+VKTPGGKL YQ+T KRASGPKCPVTGKRIQGIPHLRPAEYKRSRL+RN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIV+KVLK+QKAKEK A KS
Sbjct:    7 YRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120          
BLAST of CF834582 vs. ExPASy Swiss-Prot
Match: RL34A_SCHPO (60S ribosomal protein L34-A OS=Schizosaccharomyces pombe GN=rpl34a PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.056e-24
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 2
Query:   41 YRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNMRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVRKVLK 346
            YR R +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP E+  +RLS N +TV RAYGG LS  AV++RI+RAFL+EEQKIV++ LK
Sbjct:    7 YRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPREF--ARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQKLK 106          
BLAST of CF834582 vs. ExPASy Swiss-Prot
Match: RL34B_SCHPO (60S ribosomal protein L34-B OS=Schizosaccharomyces pombe GN=rpl34b PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.891e-24
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 2
Query:   41 YRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNMRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVRKVLKIQKAK 361
            YR R +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP E+  +RLS N + V RAYGG LS  AV++RI+RAFL+EEQKIV++ LK    K
Sbjct:    7 YRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPREF--ARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQKLKQMSQK 111          
BLAST of CF834582 vs. ExPASy Swiss-Prot
Match: RL34A_YEAST (60S ribosomal protein L34-A OS=Saccharomyces cerevisiae GN=RPL34A PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.763e-23
Identity = 61/117 (52.14%), Postives = 78/117 (66.67%), Query Frame = 2
Query:   41 YRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNMRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVRKVLKIQ----KAKEKLASK 379
            +R R+ Y T+SN+ +VVKTPGG L  Q  KK A+ PKC   G  +QGI  LRP +Y  + +S+  +TV+RAYGG      V+ERIIRAFL+EEQKIV+KV+K Q    K  EK A K
Sbjct:    7 FRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQY--ATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIEEQKIVKKVVKEQTEAAKKSEKKAKK 121          
BLAST of CF834582 vs. ExPASy Swiss-Prot
Match: RL34B_YEAST (60S ribosomal protein L34-B OS=Saccharomyces cerevisiae GN=RPL34B PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.830e-23
Identity = 57/113 (50.44%), Postives = 76/113 (67.26%), Query Frame = 2
Query:   41 YRTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNMRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVRKVLKIQKAKEKLASK 379
            +R R+ Y T+SN+ +VVKTPGG L  Q  KK A+ PKC   G  +QGI  LRP +Y  + +S+  +TV+RAYGG      V+ERI+RAFL+EEQKIV+KV+K Q    K + K
Sbjct:    7 FRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQY--ATVSKTHKTVSRAYGGSRCANCVKERIVRAFLIEEQKIVKKVVKEQTEAAKKSEK 117          
BLAST of CF834582 vs. ExPASy Swiss-Prot
Match: RL34_AEDAL (60S ribosomal protein L34 OS=Aedes albopictus GN=RpL34 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.735e-22
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 2
Query:   44 RTRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNMRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVRKVLKIQKAKEKLASKS*IETAA 400
            R R SY TKSN+ RVV+TPGG+LVY   KK+ + PKC    +++ GI   RP+E  R R+ R ++TV R +GGVL    +RERIIRAFL++EQK+V KVLK Q+  + ++    I+  A
Sbjct:    8 RRRLSYNTKSNKRRVVRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSE--RPRMCRRLKTVTRTFGGVLCHRCLRERIIRAFLIDEQKVV-KVLKAQQLGKPVSKPPKIQKTA 123          
The following BLAST results are available for this feature:
BLAST of CF834582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RL34_TOBAC1.503e-5593.8660S ribosomal protein L34 OS=Nicotiana tabacum GN=... [more]
RL34_PEA1.661e-5492.1160S ribosomal protein L34 OS=Pisum sativum GN=RPL3... [more]
RL341_ARATH2.170e-5490.3560S ribosomal protein L34-1 OS=Arabidopsis thalian... [more]
RL342_ARATH1.077e-5390.2760S ribosomal protein L34-2 OS=Arabidopsis thalian... [more]
RL343_ARATH6.980e-5388.6060S ribosomal protein L34-3 OS=Arabidopsis thalian... [more]
RL34A_SCHPO3.056e-2454.9060S ribosomal protein L34-A OS=Schizosaccharomyces... [more]
RL34B_SCHPO8.891e-2452.3460S ribosomal protein L34-B OS=Schizosaccharomyces... [more]
RL34A_YEAST5.763e-2352.1460S ribosomal protein L34-A OS=Saccharomyces cerev... [more]
RL34B_YEAST9.830e-2350.4460S ribosomal protein L34-B OS=Saccharomyces cerev... [more]
RL34_AEDAL3.735e-2248.7460S ribosomal protein L34 OS=Aedes albopictus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834582 ID=CF834582; Name=CF834582; organism=Citrus sinensis; type=EST; length=545bp
CCTCCTCGAAACCCATCGAAAATGGTTCAACGTCTCACAGTACCGCACGC
GCCACAGCTATGCCACCAAGTCCAACCAGCACCGCGTCGTCAAAACCCCC
GGGGGGAAGCTGGTTTACCAGAGCACCAAGAAGAGAGCAAGTGGGCCTAA
GTGTCCTGTCACTGGAAAAAGGATCCAAGGAATTCCTCACTTGAGACCTG
CTGAGTACAAAAGGTCTAGACTATCTCGAAATATGAGGACTGTCAACCGT
GCCTATGGGGGTGTATTATCTGGAGGTGCTGTCAGGGAGAGGATTATCCG
GGCCTTTTTGGTGGAGGAGCAGAAGATTGTCAGGAAAGTGCTGAAGATTC
AGAAGGCCAAAGAAAAGCTGGCATCTAAGAGTTAAATTGAGACAGCAGCT
TTTGTTTTGCAGTTTTAGTTTTCTTATGAAATTTTGACTTGTATGAATTA
TTTACAATGGCATTTTGTGCCGCTCTATTTAAACGTGAATGAGCATTTGG
TTTTTGCTTGGATGTTTCTTTACCCAGAAAGAAAAAAAAAAAGAA
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