CF834602
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834602 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2) HSP 1 Score: 248.825 bits (634), Expect = 2.047e-65 Identity = 126/154 (81.82%), Postives = 134/154 (87.01%), Query Frame = -3 Query: 239 SDIRVHFKNTRETAHAIRKLPLMKAKRYLEDVMAHKQAIPFTRFCGGVGRAAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNGEVKGLDVDALYICHIQVNQAQKQRRRTYRAHGRINPYMSSPFHIELTLSXXXXXXXXXXETQLATSKSKK 700 SD+RVHFKNTRETAHAIRKLPL+KAKRYLEDV+AHKQAIPFTRFC GVGR AQAKNRH NGQGRWP KSA+F+LDLLKNAESN EVKGLDVDAL+I HIQVNQA KQRRRTYRAHGRINPYMS+P HIEL LS ETQLA +KSKK Sbjct: 20 SDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172
BLAST of CF834602 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1) HSP 1 Score: 246.514 bits (628), Expect = 1.016e-64 Identity = 125/154 (81.17%), Postives = 133/154 (86.36%), Query Frame = -3 Query: 239 SDIRVHFKNTRETAHAIRKLPLMKAKRYLEDVMAHKQAIPFTRFCGGVGRAAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNGEVKGLDVDALYICHIQVNQAQKQRRRTYRAHGRINPYMSSPFHIELTLSXXXXXXXXXXETQLATSKSKK 700 +D+RVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPFTRFC GVGR AQAKNRH NGQGRWP KSA+F+LDLLKNAESN EVKGLDVDAL+I HIQVNQA KQRRRTYRAHGRINPYMS+P HIEL LS ETQLA +KSKK Sbjct: 20 ADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172
BLAST of CF834602 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 4.719e-62 Identity = 114/132 (86.36%), Postives = 122/132 (92.42%), Query Frame = -3 Query: 302 DIRVHFKNTRETAHAIRKLPLMKAKRYLEDVMAHKQAIPFTRFCGGVGRAAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNGEVKGLDVDALYICHIQVNQAQKQRRRTYRAHGRINPYMSSPFHIELTLS 697 D+RVHFKNTRETA A+RKLPL KAKRYLEDV+AHKQAIPF R+CGGVGR AQAK+RH NGQGRWPVKSA+FILDLLKNAESN +VKGLDVD LY+ HIQVNQAQKQRRRTYRAHGRINPYMSSP HIEL LS Sbjct: 21 DLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILS 152
BLAST of CF834602 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 236.113 bits (601), Expect = 1.373e-61 Identity = 113/132 (85.61%), Postives = 120/132 (90.91%), Query Frame = -3 Query: 302 DIRVHFKNTRETAHAIRKLPLMKAKRYLEDVMAHKQAIPFTRFCGGVGRAAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNGEVKGLDVDALYICHIQVNQAQKQRRRTYRAHGRINPYMSSPFHIELTLS 697 D+RVHFKNTRETA A+RK+PL KAKRYLEDV+AHKQAIPF R+C GVGR AQ KNR PNGQGRWP KSAKF+LDLLKNAESN EVKGLDVDALYI HIQVNQAQKQRRRTYRAHGRINPYMS+P HIEL LS Sbjct: 21 DLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152
BLAST of CF834602 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 5.768e-60 Identity = 110/132 (83.33%), Postives = 119/132 (90.15%), Query Frame = -3 Query: 302 DIRVHFKNTRETAHAIRKLPLMKAKRYLEDVMAHKQAIPFTRFCGGVGRAAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNGEVKGLDVDALYICHIQVNQAQKQRRRTYRAHGRINPYMSSPFHIELTLS 697 D+RVHFKNTRETA A+R++PL KAKRYLEDV+AHKQAIPF R+C GVGR AQ KNR PNGQGRWP KSA+F+LDLLKNAESN EVKGLDVD LYI HIQVNQAQKQRRRTYRAHGRINPYMS+P HIEL LS Sbjct: 21 DLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152
BLAST of CF834602 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 1.474e-47 Identity = 96/133 (72.18%), Postives = 110/133 (82.71%), Query Frame = -3 Query: 302 SDIRVHFKNTRETAHAIRKLPLMKAKRYLEDVMAHKQAIPFTRFCGGVGRAAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNGEVKGLDVDALYICHIQVNQAQKQRRRTYRAHGRINPYMSSPFHIELTLS 700 S +RVHFKNTRETA AI+K+ + KA RYL+DV+A KQ IPF RFCGGVGR AQAK + QGRWPVKSA+F+L LLKNAESN +VKGLDVD+L I HIQVN+A RRRTYRAHGRINPYMSSP HIE+ +S Sbjct: 20 SYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAK-AFKHTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVS 151
BLAST of CF834602 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.992e-44 Identity = 91/132 (68.94%), Postives = 104/132 (78.79%), Query Frame = -3 Query: 305 DIRVHFKNTRETAHAIRKLPLMKAKRYLEDVMAHKQAIPFTRFCGGVGRAAQAKN-RHPNGQGRWPVKSAKFILDLLKNAESNGEVKGLDVDALYICHIQVNQAQKQRRRTYRAHGRINPYMSSPFHIELTL 697 D+RVHFKNTRETA AI+ + L KA RYL DV+ KQ IPF RF GGVGR AQAKN + P QGRWP KSA+F++ LL+NAESN EVK L+ DAL I HIQVN+A RRRTYRAHGRINPYM+SP HIE+ L Sbjct: 21 DLRVHFKNTRETAQAIKGMHLKKALRYLNDVIEKKQIIPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEMFL 152
BLAST of CF834602 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3) HSP 1 Score: 177.178 bits (448), Expect = 7.569e-44 Identity = 89/133 (66.92%), Postives = 106/133 (79.70%), Query Frame = -3 Query: 302 SDIRVHFKNTRETAHAIRKLPLMKAKRYLEDVMAHKQAIPFTRFCGGVGRAAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNGEVKGLDVDALYICHIQVNQAQKQRRRTYRAHGRINPYMSSPFHIELTLS 700 S++RVHFKNTRETA AI+ + + KA +YL+DV KQ +PF R+ GGVGR AQAK QGRWP KSA+F+L +LKNAESN E+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSP HIE+ L+ Sbjct: 20 SNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151
BLAST of CF834602 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3) HSP 1 Score: 177.178 bits (448), Expect = 7.569e-44 Identity = 89/133 (66.92%), Postives = 106/133 (79.70%), Query Frame = -3 Query: 302 SDIRVHFKNTRETAHAIRKLPLMKAKRYLEDVMAHKQAIPFTRFCGGVGRAAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNGEVKGLDVDALYICHIQVNQAQKQRRRTYRAHGRINPYMSSPFHIELTLS 700 S++RVHFKNTRETA AI+ + + KA +YL+DV KQ +PF R+ GGVGR AQAK QGRWP KSA+F+L +LKNAESN E+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSP HIE+ L+ Sbjct: 20 SNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151
BLAST of CF834602 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3) HSP 1 Score: 176.792 bits (447), Expect = 9.885e-44 Identity = 89/133 (66.92%), Postives = 106/133 (79.70%), Query Frame = -3 Query: 302 SDIRVHFKNTRETAHAIRKLPLMKAKRYLEDVMAHKQAIPFTRFCGGVGRAAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNGEVKGLDVDALYICHIQVNQAQKQRRRTYRAHGRINPYMSSPFHIELTLS 700 S++RVHFKNTRETA AI+ + + KA +YL+DV KQ +PF R+ GGVGR AQAK QGRWP KSA+F+L +LKNAESN E+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSP HIE+ L+ Sbjct: 20 SNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151 The following BLAST results are available for this feature:
BLAST of CF834602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834602 ID=CF834602; Name=CF834602; organism=Citrus sinensis; type=EST; length=702bpback to top |