CF834614

Overview
NameCF834614
Unique NameCF834614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834614 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.445e-18
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = 3
Query:  183 TTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 338
            TT+KARVNNAG+A+ALIQHEWRPKS FT+SGEVD+KAI+KSAK G+ALALKP
Sbjct:  223 TTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274          
BLAST of CF834614 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.205e-18
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 3
Query:  183 TTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 338
            T++KARVN+AGIASALIQHEW+PKS FTISGEVDTK+I+KSAK GLALALKP
Sbjct:  225 TSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276          
BLAST of CF834614 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.492e-18
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 3
Query:  183 TTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 338
            TT+KARVN+ G ASALIQHEWRPKSLFTISGEVDT+AIEKSAK GLA+ALKP
Sbjct:  225 TTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276          
BLAST of CF834614 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.368e-18
Identity = 41/52 (78.85%), Postives = 49/52 (94.23%), Query Frame = 3
Query:  183 TTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 338
            T++KAR+NN G ASAL+QHEWRPKSLFT+SGEVDTK+++K AKFGLALALKP
Sbjct:  225 TSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276          
BLAST of CF834614 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  183 TTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 338
            TT+K RV N+G ASALIQHEWRPKSL TIS EVDTKAIEKSAK GL+LALKP
Sbjct:  225 TTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276          
BLAST of CF834614 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 3
Query:  183 TTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 338
            T +KAR NN+G ASAL+QHEWRPKS++TIS EVDTKAI+KS+K G+A+ALKP
Sbjct:  223 TVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274          
BLAST of CF834614 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 3
Query:  183 TTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALK 335
            TT+K R NN G+ASAL+QHEWRPKS  TISG+VDTKAIEKS K GL+L LK
Sbjct:  226 TTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLK 276          
BLAST of CF834614 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.160e-14
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  183 TTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 338
            T +KAR+NN+G ASALIQHE+ PKSL TIS EVDTKAIEKS+K G+A+ALKP
Sbjct:  224 TLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275          
The following BLAST results are available for this feature:
BLAST of CF834614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC2_ARATH1.445e-1882.69Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_ARATH4.205e-1884.62Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC2_SOLTU5.492e-1886.54Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU9.368e-1878.85Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC_PEA1.036e-1682.69Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ORYSJ3.332e-1573.08Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC_MAIZE7.423e-1574.51Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC1_WHEAT2.160e-1475.00Mitochondrial outer membrane porin OS=Triticum aes... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05N06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834614 ID=CF834614; Name=CF834614; organism=Citrus sinensis; type=EST; length=615bp
CGTTATAAGTTTTTTTTTAATCAACACATTGATACACAATACCTTTTATT
TATTAATTAAAGAAGACAAAGTACATGAACGCAAACAAAGATAATCTCTT
GTATAAGAGATTTTTGTAAGTGAACTGAACTAAATTGACACTCTTATAAT
TGATAGATAATAACCACATATTAGATCCACTGACCACATTGAAGGCGCGA
GTGAACAATGCTGGCATTGCTAGTGCTCTCATCCAGCATGAGTGGCGTCC
AAAGTCGTTGTTCACCATTTCTGGTGAGGTGGACACCAAGGCCATTGAGA
AGAGTGCCAAATTTGGACTGGCATTGGCTCTAAAGCCATAGTTGAGAGCT
TGGTAGGTGTTAGTAGGCATAGTTTAGCTGTCTGTTCAAAACTGATTATG
TGTTTTGTTTTATCTCTTCTCGGGGGTTTTGGATTGTAAAATAAAATTGG
AGGATCATAAACCTGTGTCATAACTTTTGAGGGCTTTTACAATTTCCAAT
TAACCTTTTGACTGAGGTTTAATACCTGTTATTTTGTGATGTTTTCACTT
GGAGATTTTATTTCAGTCATTTAATGGCTGTCTTTAGCAATCTTATTTCA
TTTTTGTTCTGTTAA
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