CF834633
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2) HSP 1 Score: 173.711 bits (439), Expect = 4.892e-43 Identity = 84/123 (68.29%), Postives = 94/123 (76.42%), Query Frame = -1 Query: 168 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLYGKAAQQMNVPVPEGCTDPTAENFDPSARSDDGSCQY 536 ARVYDDEVR LVNS+E P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+ NADAI G YGK AQQ+N+PVPEGCTDP AENFDP+ARSDDG+C Y Sbjct: 350 ARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 1.574e-41 Identity = 82/125 (65.60%), Postives = 100/125 (80.00%), Query Frame = -1 Query: 165 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLYGKAAQQM-NVPVPEGCTDPTAENFDPSARSDDGSCQYT 536 ARVYDDEVR LVNS+E P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+ N+DA+++G+ YG+ AQQ N+PVPEGCTDP A+NFDP+ARSDDGSC YT Sbjct: 341 ARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2) HSP 1 Score: 166.392 bits (420), Expect = 7.811e-41 Identity = 79/125 (63.20%), Postives = 95/125 (76.00%), Query Frame = -1 Query: 162 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLYGKAAQQMNVPVPEGCTDPTAENFDPSARSDDGSCQYTL 536 ARVY DEVR LVNSK+ P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+ N DAI G +GKAAQQ+++PV +GCTDP A+N+DP+ARSDDGSC Y L Sbjct: 348 ARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 1.332e-40 Identity = 79/124 (63.71%), Postives = 97/124 (78.23%), Query Frame = -1 Query: 165 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLYGKAAQQMNVPVPEGCTDPTAENFDPSARSDDGSCQYT 536 ARVYDDEVR LVNS++ TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+ N DA+++G+ YGK AQQ +PVPEGCTD A+N+DP+ARSDDGSC YT Sbjct: 340 ARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 8.636e-40 Identity = 84/125 (67.20%), Postives = 96/125 (76.80%), Query Frame = -1 Query: 168 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLY-GKAAQQM-NVPVPEGCTDPTAENFDPSARSDDGSCQY 536 ARVY DEVR LVNSKE P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+ N DAI+ G Y G+AAQQ+ NVPVPEGCTDP A N+DP+ARSDDGSC Y Sbjct: 350 ARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 1.689e-27 Identity = 61/88 (69.32%), Postives = 68/88 (77.27%), Query Frame = -1 Query: 273 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLYG 536 ARVYDDEVR LVNSKE PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+ N+DA+ +G YG Sbjct: 350 ARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 4.161e-26 Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = -1 Query: 270 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLYGK 536 ARVYDDEVR LVNS+E PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+ N DA+++G YGK Sbjct: 337 ARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 4.600e-25 Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = -1 Query: 276 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLY 536 ARVYDDEVR LVNSKE PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG N DAI+SG+ + Sbjct: 352 ARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 4.600e-25 Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = -1 Query: 276 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLY 536 ARVYDDEVR L+NS + PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+ NADAI +G+ + Sbjct: 354 ARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.025e-24 Identity = 56/84 (66.67%), Postives = 65/84 (77.38%), Query Frame = -1 Query: 285 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSG 536 ARVYDDEVR LVNSKE PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+ N DAI+ G Sbjct: 350 ARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRG 433 The following BLAST results are available for this feature:
BLAST of CF834633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834633 ID=CF834633; Name=CF834633; organism=Citrus sinensis; type=EST; length=536bpback to top |