CF834724

Overview
NameCF834724
Unique NameCF834724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834724 vs. ExPASy Swiss-Prot
Match: VATL_PHAAU (V-type proton ATPase 16 kDa proteolipid subunit OS=Phaseolus aureus PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 52/63 (82.54%), Postives = 52/63 (82.54%), Query Frame = -3
Query:  422 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 610
            GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:  102 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164          
BLAST of CF834724 vs. ExPASy Swiss-Prot
Match: VATL_MESCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 52/63 (82.54%), Postives = 52/63 (82.54%), Query Frame = -3
Query:  422 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 610
            GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:  103 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of CF834724 vs. ExPASy Swiss-Prot
Match: VATL_KALDA (V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 52/63 (82.54%), Postives = 52/63 (82.54%), Query Frame = -3
Query:  422 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 610
            GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:  103 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of CF834724 vs. ExPASy Swiss-Prot
Match: VATL_BETVU (V-type proton ATPase 16 kDa proteolipid subunit OS=Beta vulgaris GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 52/63 (82.54%), Postives = 52/63 (82.54%), Query Frame = -3
Query:  422 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 610
            GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:  103 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of CF834724 vs. ExPASy Swiss-Prot
Match: VATL_ORYSJ (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. japonica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 51/63 (80.95%), Postives = 52/63 (82.54%), Query Frame = -3
Query:  422 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 610
            GLAGL+AGMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:  103 GLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of CF834724 vs. ExPASy Swiss-Prot
Match: VATL_ORYSI (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. indica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 51/63 (80.95%), Postives = 52/63 (82.54%), Query Frame = -3
Query:  422 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 610
            GLAGL+AGMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:  103 GLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of CF834724 vs. ExPASy Swiss-Prot
Match: VATL_MAIZE (V-type proton ATPase 16 kDa proteolipid subunit (Fragment) OS=Zea mays PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 51/63 (80.95%), Postives = 52/63 (82.54%), Query Frame = -3
Query:  422 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 610
            GLAGL+AGMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:   47 GLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 109          
BLAST of CF834724 vs. ExPASy Swiss-Prot
Match: VATL_AVESA (V-type proton ATPase 16 kDa proteolipid subunit OS=Avena sativa GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 51/63 (80.95%), Postives = 52/63 (82.54%), Query Frame = -3
Query:  422 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 610
            GLAGL+AGMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:  103 GLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of CF834724 vs. ExPASy Swiss-Prot
Match: VATL_TOBAC (V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.508e-19
Identity = 51/63 (80.95%), Postives = 52/63 (82.54%), Query Frame = -3
Query:  422 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 610
            GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:  103 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165          
BLAST of CF834724 vs. ExPASy Swiss-Prot
Match: VATL_SOLLC (V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.508e-19
Identity = 51/63 (80.95%), Postives = 52/63 (82.54%), Query Frame = -3
Query:  422 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 610
            GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:  102 GLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164          
The following BLAST results are available for this feature:
BLAST of CF834724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
VATL_PHAAU2.924e-1982.54V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MESCR2.924e-1982.54V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_KALDA2.924e-1982.54V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BETVU2.924e-1982.54V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ORYSJ6.515e-1980.95V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ORYSI6.515e-1980.95V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MAIZE6.515e-1980.95V-type proton ATPase 16 kDa proteolipid subunit (F... [more]
VATL_AVESA6.515e-1980.95V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_TOBAC8.508e-1980.95V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SOLLC8.508e-1980.95V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834724 ID=CF834724; Name=CF834724; organism=Citrus sinensis; type=EST; length=612bp
TTTTTTTTTTTTTTTTTGCCAACAGAAATCAGATTCTGACTTCCTTACCC
CAACACAATTTTGGCTTTACAAAACTGGAGATCCAGTAGAGAGAGTCTCA
GAAAACATTACAAGCGATTATTAGGGTATCAACAACCTATAAATGGATCC
CAAAAAATACAGCATTTTAACATTAAACTAAACAATGACAGCATGATTTT
ATTAATGGGAGAAGCTAATTCCTAATTCTACATTCTCCATCACCATTAAA
AATCGAATCAATCTGGTTGAACAATCACACCACAGACAATAACTTTTAAG
TCGAAAAAGAAAAACACTACCCAACGCAGACTACCACCTCCCGTCACAGG
CAATATGAACTGAATTCTTCTTAATGGAACACAACAGGCCAAATAACCAC
CAAGCAAAGCATCCTCTTCTAGTCTGCTCTTGACTGACCAGCACGAGAAG
AAAGAATGATACCAACAATAAGTCCATAAAGTGCCAGCGCTTCAGCAAAG
ATCAGAATGAGGATCATCCCAACGAAAAGCTTCGGCTGTTGAGCATTGGC
TCTGACACCAGCATCACCGACGATCCCAATTGCCATACCAGCGGAGAGAC
CAGCAAGGCCAC
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