CF834763

Overview
NameCF834763
Unique NameCF834763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834763_ssr78 microsatellite CF834763_ssr78:78..95. BLAST: Citrus ESTs to Prunus persica proteins V1
CF834763_ssr158 microsatellite CF834763_ssr158:158..183. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2397 contig Csv1_Contig2397:104..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HS185_ARATH (18.5 kDa class IV heat shock protein OS=Arabidopsis thaliana GN=HSP18.5 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.409e-28
Identity = 75/146 (51.37%), Postives = 87/146 (59.59%), Query Frame = -3
Query:  215 VWGPFQ--NFLEEFPLSIDLWGPFSDFPSLSRGIFP-----TRQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTDDGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQP---------QNVRVVEITGSD 604
            +W PF+  N   +FP           FPSLSR IFP     T  TQ+NW+ETP AH+FKAY PG+  D+VI FVDE+  LQI T D KF SRFKLP NA+TDQV A M    L V V K+ S  P         +NVRVVEITG D
Sbjct:   18 IWEPFELMNTFLDFPSPALFLS--HHFPSLSREIFPQTSSSTVNTQLNWTETPTAHVFKAYLPGVDQDEVIAFVDEEGYLQICTGDNKFMSRFKLPNNALTDQVTAWMEDEFLVVFVEKDASSSPPQLPEIEENRNVRVVEITGDD 161          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.768e-22
Identity = 62/142 (43.66%), Postives = 83/142 (58.45%), Query Frame = -3
Query:  224 PLSIDLWGPFSDFP----SLSRGIFPTRQ-----TQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEIT 568
            P S+D+W PF DFP    +LS   FP        T+I+W ETP AH+FKA  PGL  ++V V +++DR+LQIS +                   GKF  RF+LP NA  DQVKA+M  G+LTVTV KE   +P+ V+ +EI+
Sbjct:    2 PFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPE-VKSIEIS 142          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.227e-22
Identity = 62/145 (42.76%), Postives = 87/145 (60.00%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFP---SLSRGIFP--TRQ------TQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+D+W PF DFP   +LS   FP  +R+      T+++W ETP AH+FKA  PGL  ++V V +++D++LQIS +                   GKF  RF+LP NA  +QVKASM  G+LTVTV KE   +P +V+ +EI+G
Sbjct:   18 PFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKP-DVKAIEISG 161          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.812e-21
Identity = 59/142 (41.55%), Postives = 82/142 (57.75%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFP---SLSRGIFPTRQ-----TQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+D+W PF DFP   S     FP        T+++W ETP AH+FKA  PG+  ++V V +++DR+LQIS +                   GKF  RF+LP NA  DQVKA+M  G+LTVTV KE   +P+ V+ ++I+G
Sbjct:   18 PFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPE-VKTIDISG 158          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.366e-21
Identity = 59/138 (42.75%), Postives = 82/138 (59.42%), Query Frame = -3
Query:  221 PLSIDLWGPFSDF----PSLSRGIFPTRQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+D+W PF DF     S+S        T+++W ETP AH+FKA  PGL  ++V V +++DR+LQIS +                   GKFT RF+LP NA  ++VKASM  G+LTVTV KE   +P +V+ +EI+G
Sbjct:   18 PFSLDMWDPFKDFHVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKP-DVKAIEISG 154          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.992e-21
Identity = 60/142 (42.25%), Postives = 80/142 (56.34%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFP---SLSRGIFPTRQ-----TQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+D+W P  DFP   S     FP        T+++W ETP AH+FKA  PGL  ++V V V++DR+LQIS +                   GKF  RF+LP NA  D+VKASM  G+LTVTV KE  ++   V+ +EI+G
Sbjct:   18 PFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKE-EIKKAEVKSIEISG 158          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.534e-20
Identity = 58/137 (42.34%), Postives = 79/137 (57.66%), Query Frame = -3
Query:  221 PLSIDLWGPFSDFP---SLSRGIFPTRQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+D+W PF DFP   SLS        T+++W ETP AH+FKA  PGL  ++V + + + R+LQIS +                   GK   RF+LP NA  DQVKASM  G+LTVTV KE   +P +V+ ++I+G
Sbjct:   18 PFSLDVWDPFKDFPFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKP-DVKAIDISG 153          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.003e-20
Identity = 58/137 (42.34%), Postives = 80/137 (58.39%), Query Frame = -3
Query:  221 PLSIDLWGPFSDF---PSLSRGIFPTRQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P S+D+W PF DF    SLS        T+++W ETP AH+F+A  PGL  ++V V +++DR+LQIS +                   G F  RF+LP NA  +QVKASM  G+LTVTV KE   +P +V+ +EI+G
Sbjct:   18 PFSLDVWDPFKDFHFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKP-DVKAIEISG 153          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.417e-20
Identity = 62/137 (45.26%), Postives = 81/137 (59.12%), Query Frame = -3
Query:  221 PLSIDLWGPFSD--FPSLSRGIFPT-RQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P SID++ PF +  FP  + G       T+I+W ETP AH+FKA  PGL  ++V V V+EDR+LQIS +                   GKF  RF+LP NA  DQVKASM  G+LTVTV KE   +P +V+ +EI+G
Sbjct:   19 PFSIDVFDPFRELGFPGTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKP-DVKSIEISG 154          
BLAST of CF834763 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.612e-20
Identity = 61/137 (44.53%), Postives = 80/137 (58.39%), Query Frame = -3
Query:  221 PLSIDLWGPFSD--FPSLSRGIFPT-RQTQINWSETPRAHLFKAYFPGLTGDQVIVFVDEDRMLQISTD------------------DGKFTSRFKLPANAITDQVKASMNYGLLTVTVSKEMSLQPQNVRVVEITG 568
            P SID++ PF +  FPS + G       T+I+W ETP  H+FK   PGL  ++V V V+EDR+LQIS +                   GKF  RF+LP NA  DQVKASM  G+LTVTV KE   +P+ V+ +EI+G
Sbjct:   19 PFSIDVFDPFRELGFPSTNSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPE-VKSIEISG 154          
The following BLAST results are available for this feature:
BLAST of CF834763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
HS185_ARATH3.409e-2851.3718.5 kDa class IV heat shock protein OS=Arabidopsi... [more]
HSP11_MEDSA4.768e-2243.6618.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP16_SOYBN6.227e-2242.7618.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA1.812e-2141.5518.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP14_SOYBN2.366e-2142.7517.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA8.992e-2142.2518.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_SOYBN1.534e-2042.3417.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP13_SOYBN2.003e-2042.3417.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLPE3.417e-2045.2617.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOLLC7.612e-2044.5317.8 kDa class I heat shock protein OS=Solanum lyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834763 ID=CF834763; Name=CF834763; organism=Citrus sinensis; type=EST; length=609bp
TTTTTTTTTTTTTTTTTATTTGCAATGATAATTGATATTGATAATTTGAG
TTTTACAATATCCAAAATTACAACATAACACACACACACACACACATCTC
GAATGCTCTGCACAGTACTACACAAGTCTACACTTCAAACCAAACACAAG
CTCACATTATATATATATATATATATATATATAGGCGCAATAATATCACA
AACCCAGAAATTTAGTCAGACCCAGTAATTTCAACAACCCTAACATTTTG
TGGCTGCAGTGACATCTCCTTAGAGACTGTAACAGTGAGCAACCCATAAT
TCATGGAAGCCTTGACCTGATCGGTAATAGCATTAGCAGGCAGCTTAAAC
CTGCTCGTGAACTTGCCATCATCGGTGCTTATTTGGAGCATTCTGTCTTC
ATCGACGAACACTATCACTTGGTCTCCCGTAAGCCCTGGAAAGTAAGCTT
TGAACAAGTGGGCTCTCGGGGTCTCACTCCAGTTGATCTGGGTTTGACGG
GTTGGAAAAATCCCCCGGGAAAGTGAAGGAAAATCACTGAATGGGCCCCA
AAGGTCAATAGATAAGGGGAATTCTTCTAGAAAGTTCTGGAAGGGACCCC
ATACTTCTG
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