CF834771

Overview
NameCF834771
Unique NameCF834771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834771_ssr139 microsatellite CF834771_ssr139:139..150. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834771 vs. ExPASy Swiss-Prot
Match: ATP5E_ARATH (ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis thaliana GN=At1g51650 PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 1.676e-28
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = -1 
Query:  374 PFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPQKPTIRSDTPE 559
            PFWRAAGMTYISYSNICAN+VRNCLKEP+K EALTREKVHFS+SKW DGKPQKP +RSDTPE
Sbjct:    8 PFWRAAGMTYISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKPQKPVLRSDTPE 69
[Close]
BLAST of CF834771 vs. ExPASy Swiss-Prot
Match: ATP5E_IPOBA (ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 3.161e-27
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = -1 
Query:  371 PFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPQKPTIRSDTPEE 559
            PFWRAAGMTYI+YSN+CAN+VRNCLKEPY+ EAL+REKVHFS SKW DGKPQKP IRSDT EE
Sbjct:    8 PFWRAAGMTYITYSNLCANMVRNCLKEPYRAEALSREKVHFSFSKWVDGKPQKPAIRSDTGEE 70
[Close]
BLAST of CF834771 vs. ExPASy Swiss-Prot
Match: ATP5E_MAIZE (ATP synthase subunit epsilon, mitochondrial OS=Zea mays PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.271e-24
Identity = 48/62 (77.42%), Postives = 57/62 (91.94%), Query Frame = -1 
Query:  374 PFWRAAGMTYISYSNICANLVRNCLKEPYKTEALTREKVHFSISKWTDGKPQKPTIRSDTPE 559
            PFWRAAGMTYI YSNICA LVRNCLKEP+K+EA +REKVHFSISKWTDGK +KPT+R+++ +
Sbjct:    9 PFWRAAGMTYIGYSNICAALVRNCLKEPFKSEAASREKVHFSISKWTDGKQEKPTVRTESDD 70
The following BLAST results are available for this feature:
BLAST of CF834771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ATP5E_ARATH1.676e-2888.71ATP synthase subunit epsilon, mitochondrial OS=Ara... [more]
ATP5E_IPOBA3.161e-2784.13ATP synthase subunit epsilon, mitochondrial OS=Ipo... [more]
ATP5E_MAIZE3.271e-2477.42ATP synthase subunit epsilon, mitochondrial OS=Zea... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06B12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834771 ID=CF834771; Name=CF834771; organism=Citrus sinensis; type=EST; length=559bp
TTTTTTTTTTTTAACTAAAAGCAAAAATATCTTGAGCGAAAAACGCTTTA
ATAGAGGACATGCAAATCCCACCATTCTTACTACCCCTTATCACACCAAC
ATCACTTGGAAAATATATATCCATCAATTTCTATGAAGAACAAACAAACA
CAAGTCTAGTTTCCAAAGTAGGTCAATGCCAGTTACATTATTACAAATGC
ATTTGCCATGCAGAAACAGAAATGCAAATGTTGTTCGAGAGTTTTATGCA
TTACTGACCCAATAAGATTAAATCTACCAAATAATGAAACAGAAAAAAGC
TTTGCCGCACACATTGTTCCACTCCACACTGAGTCACTGACATTTGGACA
CCAATTTACCATTGGACTCATTCTTCCGGAGTATCAGAACGAATAGTGGG
TTTCTGGGGTTTGCCATCGGTCCACTTAGAGATAGAGAAGTGAACCTTCT
CGCGAGTGAGGGCCTCGGTTTTGTAAGGTTCCTTGAGACAATTCCTCACC
AGATTCGCACAGATGTTCGAGTACGATATGTATGTCATCCCCGCTGCTCT
CCAAAACGG
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