CF834814

Overview
NameCF834814
Unique NameCF834814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834814 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.501e-20
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = -2
Query:  355 PETQRPSLFQSLLYEAVGRTVNPVSGPVGLLWTGNWNVCQSAVERVLCGGALQPL-------------PCPLAPELDDVSESAVNCTNNSPKD 594
            P++QRP+LFQSLLYEA GRTVNPV+G +G+LWTGNWN+CQ+AVE VL GG+L+P+             P P + E  ++    +N   N   D
Sbjct:   56 PDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGFAGFPSPTSEEASEICTEMLNLQQNDSTD 148          
BLAST of CF834814 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.266e-20
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = -2
Query:  370 PETQRPSLFQSLLYEAVGRTVNPVSGPVGLLWTGNWNVCQSAVERVLCGGALQPLPCPL---------APELDDVSESAVNCTN 594
            PE+Q P+LFQSLLYEA GRTVNPV+G VGLLWTGNWNVCQ+AVE VL GG+L+P+P  L         +P  D+ SE      N
Sbjct:   56 PESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASEICTEMLN 139          
BLAST of CF834814 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.517e-17
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = -2
Query:  430 PETQRPSLFQSLLYEAVGRTVNPVSGPVGLLWTGNWNVCQSAVERVLCGGALQPL 594
            PE QRP+LFQSLL+EA GRTVNPV+G VG+LWT NW+VCQ+AVE VL GG L+P+
Sbjct:   56 PELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPI 110          
BLAST of CF834814 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = -2
Query:  415 PETQRPSLFQSLLYEAVGRTVNPVSGPVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 594
            P+  RP++F+SLLYEA GR VNP+ G VGLLW+GNW++CQ+AVE V+ G  + P+ C  A
Sbjct:   58 PDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAA 117          
BLAST of CF834814 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = -2
Query:  415 PETQRPSLFQSLLYEAVGRTVNPVSGPVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 594
            P+  RP++F+SLLYEA GR VNPV G VGL+W+GNW  CQ+AV+ VL G  +   P P A
Sbjct:   58 PDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSA 117          
BLAST of CF834814 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = -2
Query:  448 PETQRPSLFQSLLYEAVGRTVNPVSGPVGLLWTGNWNVCQSAVERVLCG 594
            P   RP +F+SLL+EA GR VNP+ G VGLLW+GNW +CQ AVE V+ G
Sbjct:   58 PNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG 106          
The following BLAST results are available for this feature:
BLAST of CF834814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD37_ARATH2.501e-2049.46LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD38_ARATH4.266e-2059.52LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD39_ARATH1.517e-1772.73LOB domain-containing protein 39 OS=Arabidopsis th... [more]
LBD40_ARATH9.206e-1556.67LOB domain-containing protein 40 OS=Arabidopsis th... [more]
LBD42_ARATH6.597e-1356.67LOB domain-containing protein 42 OS=Arabidopsis th... [more]
LBD41_ARATH1.625e-1161.22LOB domain-containing protein 41 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06C15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834814 ID=CF834814; Name=CF834814; organism=Citrus sinensis; type=EST; length=595bp
TTTTTTTTTTTTTTTTTGAGGAAATATTTTAATTAAATATACCGTTGGGC
AAAATTAAGAAGAGAAGATTATACAATAATTCTTATATAATTGGCCTAAA
ATTATTTAAGACTAAAAAAAAAAGAGAGAGGTTATTAATACTCGGCTGTT
GTTTCAGAGGAAGAGTCTCAAAAGCTTCTTTTCACCTGCGACCTCAGAGC
AACAATTATCAGACCCGGTTCCCGACGTCGTCGTTTCGGACTCCTCCGAC
GGGGTCTCCGCCCTAAGCTTCTCCGGCAAACAAGGCTTCAGACCCAGATG
AAGATCATCGTGAAAATCAGAAACGGCCTTCCTCTTCGATGGCGGAGTGA
TGACGTCCTTTGGACTATTGTTGGTACAGTTCACGGCAGATTCTGACACG
TCATCAAGTTCCGGCGCCAGTGGGCAAGGCAGCGGCTGCAACGCGCCGCC
GCAGAGAACTCTCTCAACCGCCGACTGGCACACGTTCCAGTTTCCTGTCC
ACAGAAGCCCCACGGGGCCGCTCACTGGGTTCACTGTTCTTCCCACCGCT
TCATATAACAGGGACTGAAACAATGAGGGACGTTGGGTTTCGGGG
back to top