CF834817
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834817 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 1.601e-49 Identity = 113/218 (51.83%), Postives = 137/218 (62.84%), Query Frame = 2 Query: 101 MSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVP*TQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPL---------APELDDVSESAVNCTN----------------------NSPKDVITPPSKRKAVSDFH--DDLHLGLKPCLPEK---LRAETP---SDEFETTTS 637 MSCNGCRVLRKGCSENC+LR IQWI +P+AQ +ATVFVAKFFGRAGLMSFISAVP +Q P+LFQSLLYEA GRTVNPV+GAVGLLWTGNWNVCQ+AVE VL GG+L+P+P L +P D+ SE N + + +PP +++ S+ +L L L P P K + +TP S+E TT S Sbjct: 1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASEICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQQPSSELDLSLIPIYPIKTLPFKEDTPSMYSEESVTTVS 218
BLAST of CF834817 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 6.083e-49 Identity = 119/250 (47.60%), Postives = 144/250 (57.60%), Query Frame = 2 Query: 101 MSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVP*TQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPL-------------PCPLAPELDDVSESAVNCTNNSPKD------------------VITPPSKRKAVSDF---HDDLHLGLKPCLPEK--------LRAETPSDEFETTTSGTGSDNCC--SDV-----PSEKKLLRLFL 703 MSCNGCRVLRKGCSENC+LR IQWI T AQ +ATVFVAKFFGRAGLMSFISAVP +QRP+LFQSLLYEA GRTVNPV+GA+G+LWTGNWN+CQ+AVE VL GG+L+P+ P P + E ++ +N N D + P+KRK +S +L L L P P K R+ TPS E + + T + C DV KLL LF+ Sbjct: 1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGFAGFPSPTSEEASEICTEMLNLQQNDSTDRNIYHHSRFSSSRSRSTMDSSSPTKRKRLSSEDQPSSELDLSLIPNFPIKQATPSSTRRRSVTPSMNSEDSGTTTTTTAFCDKGDVYGNGGGETTKLLNLFV 250
BLAST of CF834817 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 4.820e-46 Identity = 113/240 (47.08%), Postives = 144/240 (60.00%), Query Frame = 2 Query: 101 MSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVP*TQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQP-----------LPCPLAPEL--DDVSES-------AVNCTNNSPKDVITPPSKRKAVSDFHDDLHLGLK--------PCLPEKL--------RAETPSDEFETTT---SGTGSDNCCSDVPSEKKLLRLFL 703 MSCNGCRVLRKGCSE C+LR +QWI + ++Q +ATVFVAKFFGRAGLMSFIS+VP QRP+LFQSLL+EA GRTVNPV+GAVG+LWT NW+VCQ+AVE VL GG L+P + C + E+ DVS + + + + KD + + K+ SD ++ GL P LP R +PS+E TT+ +G DN EKKLL LF+ Sbjct: 1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLESPSLMISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLTAPAVPVPFLPPSSFCKVVKGDRPGSPSEESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV 240
BLAST of CF834817 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 9.734e-39 Identity = 71/117 (60.68%), Postives = 94/117 (80.34%), Query Frame = 2 Query: 95 INMSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVP*TQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 445 + MSCNGCRVLRKGCSENC +R +QWI + ++QANATVF+AKF+GRAGLM+ ++ P RP++F+SLLYEA GR VNP+ G+VGLLW+GNW++CQ+AVE V+ G + P+ C A Sbjct: 1 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAA 117
BLAST of CF834817 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.030e-36 Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 2 Query: 95 INMSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVP*TQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCG 412 + MSCNGCRVLRKGCSE+C +R + WI +P+AQANATVF+AKF+GRAGLM+ I+A P RP +F+SLL+EA GR VNP+ G+VGLLW+GNW +CQ AVE V+ G Sbjct: 1 MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG 106
BLAST of CF834817 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.455e-34 Identity = 66/117 (56.41%), Postives = 90/117 (76.92%), Query Frame = 2 Query: 95 INMSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVP*TQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 445 + +SCNGCRVLRKGC+++C +R +QWI + +QANAT+F+AKF+GRAGL++ I + P RP++F+SLLYEA GR VNPV G+VGL+W+GNW CQ+AV+ VL G + P P A Sbjct: 1 MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSA 117 The following BLAST results are available for this feature:
BLAST of CF834817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF834817 ID=CF834817; Name=CF834817; organism=Citrus sinensis; type=EST; length=708bpback to top |