CF834817

Overview
NameCF834817
Unique NameCF834817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834817 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.601e-49
Identity = 113/218 (51.83%), Postives = 137/218 (62.84%), Query Frame = 2
Query:  101 MSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVP*TQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPL---------APELDDVSESAVNCTN----------------------NSPKDVITPPSKRKAVSDFH--DDLHLGLKPCLPEK---LRAETP---SDEFETTTS 637
            MSCNGCRVLRKGCSENC+LR  IQWI +P+AQ +ATVFVAKFFGRAGLMSFISAVP +Q P+LFQSLLYEA GRTVNPV+GAVGLLWTGNWNVCQ+AVE VL GG+L+P+P  L         +P  D+ SE      N                      +  +   +PP +++  S+     +L L L P  P K    + +TP   S+E  TT S
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASEICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQQPSSELDLSLIPIYPIKTLPFKEDTPSMYSEESVTTVS 218          
BLAST of CF834817 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.083e-49
Identity = 119/250 (47.60%), Postives = 144/250 (57.60%), Query Frame = 2
Query:  101 MSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVP*TQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPL-------------PCPLAPELDDVSESAVNCTNNSPKD------------------VITPPSKRKAVSDF---HDDLHLGLKPCLPEK--------LRAETPSDEFETTTSGTGSDNCC--SDV-----PSEKKLLRLFL 703
            MSCNGCRVLRKGCSENC+LR  IQWI T  AQ +ATVFVAKFFGRAGLMSFISAVP +QRP+LFQSLLYEA GRTVNPV+GA+G+LWTGNWN+CQ+AVE VL GG+L+P+             P P + E  ++    +N   N   D                    + P+KRK +S       +L L L P  P K         R+ TPS   E + + T +   C   DV         KLL LF+
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGFAGFPSPTSEEASEICTEMLNLQQNDSTDRNIYHHSRFSSSRSRSTMDSSSPTKRKRLSSEDQPSSELDLSLIPNFPIKQATPSSTRRRSVTPSMNSEDSGTTTTTTAFCDKGDVYGNGGGETTKLLNLFV 250          
BLAST of CF834817 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.820e-46
Identity = 113/240 (47.08%), Postives = 144/240 (60.00%), Query Frame = 2
Query:  101 MSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVP*TQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQP-----------LPCPLAPEL--DDVSES-------AVNCTNNSPKDVITPPSKRKAVSDFHDDLHLGLK--------PCLPEKL--------RAETPSDEFETTT---SGTGSDNCCSDVPSEKKLLRLFL 703
            MSCNGCRVLRKGCSE C+LR  +QWI + ++Q +ATVFVAKFFGRAGLMSFIS+VP  QRP+LFQSLL+EA GRTVNPV+GAVG+LWT NW+VCQ+AVE VL GG L+P           + C  + E+   DVS +       + + +    KD +    + K+ SD    ++ GL         P LP           R  +PS+E  TT+   +G   DN       EKKLL LF+
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDLLESPSLMISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTLTAPAVPVPFLPPSSFCKVVKGDRPGSPSEESVTTSCWENGMRGDNKQKRNKGEKKLLNLFV 240          
BLAST of CF834817 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.734e-39
Identity = 71/117 (60.68%), Postives = 94/117 (80.34%), Query Frame = 2
Query:   95 INMSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVP*TQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 445
            + MSCNGCRVLRKGCSENC +R  +QWI + ++QANATVF+AKF+GRAGLM+ ++  P   RP++F+SLLYEA GR VNP+ G+VGLLW+GNW++CQ+AVE V+ G  + P+ C  A
Sbjct:    1 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAA 117          
BLAST of CF834817 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.030e-36
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 2
Query:   95 INMSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVP*TQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCG 412
            + MSCNGCRVLRKGCSE+C +R  + WI +P+AQANATVF+AKF+GRAGLM+ I+A P   RP +F+SLL+EA GR VNP+ G+VGLLW+GNW +CQ AVE V+ G
Sbjct:    1 MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG 106          
BLAST of CF834817 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.455e-34
Identity = 66/117 (56.41%), Postives = 90/117 (76.92%), Query Frame = 2
Query:   95 INMSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVP*TQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 445
            + +SCNGCRVLRKGC+++C +R  +QWI +  +QANAT+F+AKF+GRAGL++ I + P   RP++F+SLLYEA GR VNPV G+VGL+W+GNW  CQ+AV+ VL G  +   P P A
Sbjct:    1 MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSA 117          
The following BLAST results are available for this feature:
BLAST of CF834817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD38_ARATH1.601e-4951.83LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD37_ARATH6.083e-4947.60LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD39_ARATH4.820e-4647.08LOB domain-containing protein 39 OS=Arabidopsis th... [more]
LBD40_ARATH9.734e-3960.68LOB domain-containing protein 40 OS=Arabidopsis th... [more]
LBD41_ARATH2.030e-3665.09LOB domain-containing protein 41 OS=Arabidopsis th... [more]
LBD42_ARATH1.455e-3456.41LOB domain-containing protein 42 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06C16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834817 ID=CF834817; Name=CF834817; organism=Citrus sinensis; type=EST; length=708bp
CCAATCCAAGCTTTATGCTATCTTTATAATTATTTATTTTATTTAATTTT
TATTTTTGCTTCTGTTTTGTATGACGTGTGCTGGGCGAAAAAAAATCAAC
ATGAGTTGCAATGGGTGTAGAGTTCTGAGAAAAGGTTGCAGTGAAAACTG
CTTGCTTCGTCAAAGCATTCAATGGATCGGCACCCCACAAGCTCAAGCAA
ACGCCACCGTTTTTGTTGCCAAGTTCTTCGGCCGCGCCGGCCTCATGTCC
TTCATCTCCGCCGTCCCCTAAACCCAACGTCCCTCTTTGTTTCAGTCGCT
GTTATATGAAGCGGTGGGAAGAACAGTGAACCCAGTGAGCGGCGCCGTGG
GGCTTCTGTGGACAGGAAACTGGAACGTGTGCCAGTCGGCGGTTGAGAGA
GTTCTCTGCGGCGGCGCGTTGCAGCCGCTGCCTTGCCCACTGGCGCCGGA
ACTTGATGACGTGTCAGAATCTGCCGTGAACTGTACCAACAATAGTCCAA
AGGACGTCATCACTCCGCCATCGAAGAGGAAGGCCGTTTCTGATTTTCAC
GATGATCTTCATCTGGGTCTGAAGCCTTGTTTGCCGGAGAAGCTTAGGGC
GGAGACGCCGTCTGATGAGTTCGAAACGACGACGTCGGGAACCGGGTCTG
ATAATTGTTGCTCTGATGTCCCAAGTGAAAAGAAGCTTTTGAGACTCTTC
CTCTGAAA
back to top