CF834984
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 1.827e-67 Identity = 126/206 (61.17%), Postives = 154/206 (74.76%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 673 LVAAQ +PF+YC +VT+TTHK+LRGPR+G+IF+R E YD E KINFAVFPSLQGGPH + I +AVALK+A + FK YA QVK NA A+GN L KGY LVT GT+NHL+LWDLRP LTGNK EK D+ NITVNKNAV GD++A++PGG+RIG+ A+TSRGL E DFE+I +FL R V+++LEIQ G Sbjct: 218 LVAAQLLDSPFDYCDVVTSTTHKTLRGPRSGIIFFRRGKRVDGNGK-EIEEYDIESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEFKEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRVG 422 HSP 2 Score: 25.7942 bits (55), Expect = 1.827e-67 Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD + A L+CDMAH S Sbjct: 200 IADKVGAYLMCDMAHYS 216
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 1.277e-65 Identity = 118/208 (56.73%), Postives = 159/208 (76.44%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYD--FEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 673 +VA ++A +PF +C +VTTTTHK+LRGPRAG+IF+R +G + D E++INFAVFPS QGGPH + I +AVALK+AS+P F+ Y KQV+ N+ +G L +GYSLVT GT+NHLVLWDLRP G+TG+K+EK CD +ITVNKNAV+GD++A+APGGVR+G PA+TSRGL E+DF ++ +FL R V ++L+IQ + G Sbjct: 242 MVAGKQAISPFLFCDVVTTTTHKTLRGPRAGLIFFRKTKRRDA----KGNIIDDDLENRINFAVFPSCQGGPHENTIAGIAVALKEASSPDFQEYTKQVRRNSQTMGEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKVG 445 HSP 2 Score: 26.9498 bits (58), Expect = 1.277e-65 Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD A LLCDMAHIS Sbjct: 224 IADKHGAYLLCDMAHIS 240
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 5.203e-61 Identity = 116/206 (56.31%), Postives = 142/206 (68.93%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 673 LVAA +PFE+CH+VTTTTHK+LRG RAGMIFYR + +Y+ E IN AVFP LQGGPHNH I +AVALKQA T FK Y QV AN AL LT GY +VTGG++NHL+L DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F+HR + LTL+IQ + G Sbjct: 235 LVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVQSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTG 440 HSP 2 Score: 22.7126 bits (47), Expect = 5.203e-61 Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD A L+ DMAHIS Sbjct: 217 IADENGAYLMADMAHIS 233
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 5.203e-61 Identity = 116/206 (56.31%), Postives = 142/206 (68.93%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 673 LVAA +PFE+CH+VTTTTHK+LRG RAGMIFYR + +Y+ E IN AVFP LQGGPHNH I +AVALKQA T FK Y QV AN AL LT GY +VTGG++NHL+L DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F+HR + LTL+IQ + G Sbjct: 235 LVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVKSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTG 440 HSP 2 Score: 22.7126 bits (47), Expect = 5.203e-61 Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD A L+ DMAHIS Sbjct: 217 IADENGAYLMADMAHIS 233
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3) HSP 1 Score: 233.417 bits (594), Expect = 6.784e-61 Identity = 115/206 (55.83%), Postives = 142/206 (68.93%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 673 LVAA +PFE+CH+V+TTTHK+LRG RAGMIFYR Y+ E IN AVFP LQGGPHNH I +AVALKQA TP F+AY +QV AN AL L G GY +VTGG++NHL+L DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLE+DF+++ F+HR + LTL+IQ G Sbjct: 235 LVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVG 440 HSP 2 Score: 22.3274 bits (46), Expect = 6.784e-61 Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD A L+ DMAH+S Sbjct: 217 IADDNGAYLMADMAHVS 233
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3) HSP 1 Score: 233.032 bits (593), Expect = 6.784e-61 Identity = 115/206 (55.83%), Postives = 142/206 (68.93%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 673 LVAA +PFE+CH+V+TTTHK+LRG RAGMIFYR + Y+ E IN AVFP LQGGPHNH I +AVALKQA TP F+AY +QV AN AL L G GY +VTGG++NHL+L DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLE+DF ++ F+HR + LTL+IQ G Sbjct: 235 LVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVG 440 HSP 2 Score: 22.7126 bits (47), Expect = 6.784e-61 Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD A L+ DMAHIS Sbjct: 217 IADDNGAYLMADMAHIS 233
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2) HSP 1 Score: 232.646 bits (592), Expect = 8.845e-61 Identity = 114/206 (55.34%), Postives = 142/206 (68.93%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 673 LV A +PFE+CH+VTTTTHK+LRG RAGMIFYR + +Y+ E IN AVFP LQGGPHNH I +AVALKQA TP FK Y +QV AN AL L GY +VTGG++NHL+L DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F+HR + LT++IQ + G Sbjct: 235 LVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTG 440 HSP 2 Score: 22.7126 bits (47), Expect = 8.845e-61 Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD A L+ DMAHIS Sbjct: 217 IADENGAYLMADMAHIS 233
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2) HSP 1 Score: 231.106 bits (588), Expect = 2.556e-60 Identity = 114/202 (56.44%), Postives = 140/202 (69.31%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ 661 LVAA +PFE+CH+VTTTTHK+LRG RAGMIFYR + Y+ E IN AVFP LQGGPHNH I +AVALKQA T FK Y QV AN AL + LT GY +VTGG++NHL+L DLR G G + EK+ + C+I NKN GD SAL P G+R+GTPA+TSRGLLE+DF+++ F+HR + LTL+IQ Sbjct: 229 LVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQ 430 HSP 2 Score: 22.7126 bits (47), Expect = 2.556e-60 Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 +AD A L+ DMAHIS Sbjct: 211 IADDNGAYLMADMAHIS 227
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 1.637e-59 Identity = 112/204 (54.90%), Postives = 144/204 (70.59%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667 LVAA+ +PF++ IVTTTTHK+LRG R+G+IFYR Y FED+INFAVFPSLQGGPHNH I A+AVALKQA TP F+ Y+ Q+ NA A+ N L +GYSLV+GGT+NHLVL DLRP GL G + E++ +L +IT NKN GD SA+ PGG+R+G PA+TSRG LE DF ++ F+ V + LE++ + Sbjct: 258 LVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVQAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSK 461 HSP 2 Score: 24.6386 bits (52), Expect = 1.637e-59 Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 V D ++A LL DMAHIS Sbjct: 240 VCDEVKAHLLADMAHIS 256
BLAST of CF834984 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 6.165e-59 Identity = 112/204 (54.90%), Postives = 146/204 (71.57%), Query Frame = 2 Query: 56 LVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 667 LVAA +PF+Y +VTTTTHKSLRGPR MIF+R E YD+EDKIN AVFP LQGGPHNH I LAVALKQA+TP ++AY +QV +N+ L+ KGY LV+GGTENHLVL +L+ G+ G++VEK+ +L +I NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+ AV+L L+++ E Sbjct: 265 LVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKE-VFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAE 467 HSP 2 Score: 25.0238 bits (53), Expect = 6.165e-59 Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1 Query: 1 VADPLRALLLCDMAHIS 51 V D +A+LL DMAHIS Sbjct: 247 VCDKQKAVLLADMAHIS 263 The following BLAST results are available for this feature:
BLAST of CF834984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834984 ID=CF834984; Name=CF834984; organism=Citrus sinensis; type=EST; length=675bpback to top |